1VRB

Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1vrbb_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1vrba1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1vrbc_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d1vrbd_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)
A	SCOP2 Family	Asparaginyl hydroxylase-like	8020322	4002145	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF08007	e1vrbB1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PF08007	ECOD (1.6)
A	PF08007	e1vrbA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PF08007	ECOD (1.6)
C	PF08007	e1vrbC1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PF08007	ECOD (1.6)
D	PF08007	e1vrbD1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PF08007	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
B	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
A	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
C	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
C	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
D	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08007	JmjC domain (JmjC_2)	JmjC domain	This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase fro ...	This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase from Escherichia coli [4,5]. Proteins are bifunctional, acting as histone lysine demethylases and ribosomal histidine hydroxylases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative asparaginyl hydroxylase	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003347	JmjC domain	Domain
A, B, C, D	IPR039994	Histone lysine demethylase/ribosomal histidine hydroxylase NO66-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.