1VPV

Crystal structure of a degv lipid binding protein (tm1468) from thermotoga maritima at 2.45 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vpva_	Alpha and beta proteins (a/b)	DAK1/DegV-like	DAK1/DegV-like	DegV-like	Hypothetical protein TM841	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1vpvb_	Alpha and beta proteins (a/b)	DAK1/DegV-like	DAK1/DegV-like	DegV-like	Hypothetical protein TM841	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DAK1/DegV-like	8043541	3000337	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DAK1/DegV-like	8043541	3000337	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DegV_C	e1vpvA2	A: a+b three layers	X: Bacillus chorismate mutase-like	H: DAK1/DegV C-terminal domain (From Topology)	T: DAK1/DegV C-terminal domain	F: DegV_C	ECOD (1.6)
A	DegV_N	e1vpvA1	A: a/b three-layered sandwiches	X: EDD domain (From Topology)	H: EDD domain (From Topology)	T: EDD domain	F: DegV_N	ECOD (1.6)
B	DegV_C	e1vpvB1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: DAK1/DegV C-terminal domain (From Topology)	T: DAK1/DegV C-terminal domain	F: DegV_C	ECOD (1.6)
B	DegV_N	e1vpvB2	A: a/b three-layered sandwiches	X: EDD domain (From Topology)	H: EDD domain (From Topology)	T: EDD domain	F: DegV_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.30.1180.10	Alpha Beta	2-Layer Sandwich	Hypothetical Protein Tm841	Chain: A	CATH (4.3.0)
B	3.40.50.10170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.30.1180.10	Alpha Beta	2-Layer Sandwich	Hypothetical Protein Tm841	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02645	Uncharacterised protein, DegV family COG1307 (DegV)	Uncharacterised protein, DegV family COG1307	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	UPF0230 protein TM1468	binding lipid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003797	DegV	Family
A, B	IPR043168	DegV, C-terminal domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.