1VI8

Crystal structure of a putative thioesterase

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1vi8b1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1vi8b3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1vi8b2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1vi8h1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1vi8h3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1vi8h2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1vi8a1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1vi8a3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1vi8a2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1vi8c1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1vi8c3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1vi8c2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1vi8d1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1vi8d3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1vi8d2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1vi8e1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1vi8e3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1vi8e2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1vi8f1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1vi8f3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1vi8f2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1vi8g1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase PaaI/YdiI-like Hypothetical protein YdiI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1vi8g3 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1vi8g2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like8041525 3000149 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF03061e1vi8B1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
HPF03061e1vi8H1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
APF03061e1vi8A1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
CPF03061e1vi8C1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
DPF03061e1vi8D1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
EPF03061e1vi8E1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
FPF03061e1vi8F1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)
GPF03061e1vi8G1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: PF03061ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
H3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
A3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
C3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
D3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
E3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
F3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
G3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03061Thioesterase superfamily (4HBT)Thioesterase superfamilyThis family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas ...This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Hypothetical protein ydiI

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR0308631,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenIFamily
A, B, C, D, E
IPR029069HotDog domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR006683Thioesterase domainDomain
A, B, C, D, E
IPR003736Phenylacetic acid degradation-related domainDomain