1UW4
The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1uw4a_ | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Smg-4/UPF3 | RNA processing protein UPF3x, RRM domain | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d1uw4c_ | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Smg-4/UPF3 | RNA processing protein UPF3x, RRM domain | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1uw4b_ | All alpha proteins | alpha-alpha superhelix | ARM repeat | MIF4G domain-like | Regulator of nonsense transcripts 2, UPF2 | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d1uw4d_ | All alpha proteins | alpha-alpha superhelix | ARM repeat | MIF4G domain-like | Regulator of nonsense transcripts 2, UPF2 | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Smg-4/UPF3-like | 8022806 | 4001467 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2B (2022-06-29) |
B | SCOP2 Family | MA3 domain-like | 8022811 | 4000569 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03467 | e1uw4A1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF03467 | ECOD (1.6) |
C | PF03467 | e1uw4C1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF03467 | ECOD (1.6) |
B | PF02854 | e1uw4B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
D | PF02854 | e1uw4D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
C | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
B | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
D | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03467 | Smg-4/UPF3 family (Smg4_UPF3) | Smg-4/UPF3 family | - | Family | |
PF02854 | MIF4G domain (MIF4G) | MIF4G domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034979 | UPF3B, RNA recognition motif-like domain | Domain | |
IPR039722 | Nonsense-mediated mRNA decay protein 3 | Family | |
IPR005120 | UPF3 domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR039762 | Nonsense-mediated mRNA decay protein Nmd2/UPF2 | Family | |
IPR007193 | Up-frameshift suppressor 2, C-terminal | Domain | |
IPR003890 | MIF4G-like, type 3 | Domain |