1SG1
Crystal Structure of the Receptor-Ligand Complex between Nerve Growth Factor and the Common Neurotrophin Receptor p75
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cystine-knot cytokines | 8038796 | 3000846 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8038796 | 3000846 | SCOP2B (2022-06-29) |
C [auth X] | SCOP2 Family | TNF receptor-like | 8027033 | 4003512 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Family | TNF receptor-like | 8027034 | 4003512 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Family | TNF receptor-like | 8027035 | 4003512 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Family | TNF receptor-like | 8027036 | 4003512 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Superfamily | TNF receptor-like | 8039412 | 3000971 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Superfamily | TNF receptor-like | 8039413 | 3000971 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Superfamily | TNF receptor-like | 8039414 | 3000971 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Superfamily | TNF receptor-like | 8039415 | 3000971 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00243 | e1sg1A1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00243 | ECOD (1.6) |
B | PF00243 | e1sg1B1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00243 | ECOD (1.6) |
C [auth X] | F_UNCLASSIFIED | e1sg1X2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth X] | PF00020 | e1sg1X3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
C [auth X] | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00243 | Nerve growth factor family (NGF) | Nerve growth factor family | - | Domain | |
C [auth X] | PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020408 | Nerve growth factor-like | Family | |
IPR019846 | Nerve growth factor conserved site | Conserved Site | |
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR020437 | Nerve growth factor, beta subunit, mammalian | Family | |
IPR002072 | Nerve growth factor-related | Domain | |
IPR020425 | Nerve growth factor, beta subunit | Family | |
C [auth X] | IPR000488 | Death domain | Domain |
C [auth X] | IPR022325 | Tumour necrosis factor receptor 16 | Family |
C [auth X] | IPR041448 | Tumor necrosis factor receptor member 16, transmembrane domain | Domain |
C [auth X] | IPR034046 | Tumor necrosis factor receptor 16, N-terminal | Domain |
C [auth X] | IPR011029 | Death-like domain superfamily | Homologous Superfamily |
C [auth X] | IPR001368 | TNFR/NGFR cysteine-rich region | Domain |