1PP7
Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth U] | d1pp7u_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | 39 kda initiator binding protein, IBP39, N-terminal domain | 39 kda initiator binding protein, IBP39, N-terminal domain | (Trichomonas vaginalis ) [TaxId: 5722 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth U] | SCOP2 Family | IBP3 DNA-binding domain-like | 8003144 | 4000219 | SCOP2 (2022-06-29) |
C [auth U] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8003145 | 3000034 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth U] | PF10416 | e1pp7U1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10416 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth U] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth U] | PF10416 | Transcription-initiator DNA-binding domain IBD (IBD) | Transcription-initiator DNA-binding domain IBD | In Trichomonas vaginalis, thought to be the earliest extant eukaryote, the sole initiator element for control of the start of transcription is Inr, and this is recognised by the initiator binding protein IBP39. IBP39 contains an N-terminal Inr bindin ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E] | FERREDOXIN INR | - | - | - |
B [auth F] | FERREDOXIN INR | - | - | - |
C [auth U] | 39 kDa initiator binding protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth U] | IPR018845 | Initiator binding domain | Domain |
C [auth U] | IPR036184 | IBP39, C-terminal domain superfamily | Homologous Superfamily |
C [auth U] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
C [auth U] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
C [auth U] | IPR024238 | Initiator binding protein 39kDa, C-terminal | Domain |