1PMD
PENICILLIN-BINDING PROTEIN 2X (PBP-2X)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1pmda1 | Alpha and beta proteins (a+b) | Penicillin-binding protein 2x (pbp-2x), c-terminal domain | Penicillin-binding protein 2x (pbp-2x), c-terminal domain | Penicillin-binding protein 2x (pbp-2x), c-terminal domain | Penicillin-binding protein 2x (pbp-2x), c-terminal domain | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
A | d1pmda3 | Alpha and beta proteins (a+b) | Penicillin binding protein dimerisation domain | Penicillin binding protein dimerisation domain | Penicillin binding protein dimerisation domain | Penicillin-binding protein 2x (pbp-2x), N-terminal domain | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
A | d1pmda4 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | Penicillin-binding protein 2x (pbp-2x), transpeptidase domain | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Penicillin-binding protein 2x (pbp-2x) c-terminal domain | 8034369 | 3000202 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8037377 | 3001604 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Penicillin binding protein dimerisation domain | 8037247 | 3001420 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Penicillin-binding protein 2x (pbp-2x) c-terminal domain | 8034366 | 3000202 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03717 | e1pmdA2 | A: beta complex topology | X: Penicillin binding protein dimerisation domain (From Topology) | H: Penicillin binding protein dimerisation domain (From Topology) | T: Penicillin binding protein dimerisation domain | F: PF03717 | ECOD (1.6) |
A | PF00905 | e1pmdA4 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
A | PF03793 | e1pmdA5 | A: a+b two layers | X: CI-2 family of serine protease inhibitors-like | H: Penicillin-binding protein 2x (pbp-2x)-C (From Topology) | T: Penicillin-binding protein 2x (pbp-2x)-C | F: PF03793 | ECOD (1.6) |
A | PF03717 | e1pmdA3 | A: a+b two layers | X: ClpS-like | H: Penicillin binding protein ClpS-like domain (From Topology) | T: Penicillin binding protein ClpS-like domain | F: PF03717 | ECOD (1.6) |
A | PF00905 | e1pmdA6 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03717 | Penicillin-binding Protein dimerisation domain (PBP_dimer) | Penicillin-binding Protein dimerisation domain | This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerisation. The domain forms a largely disordered 'sugar tongs' st ... | Domain | |
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain | |
PF03793 | PASTA domain (PASTA) | PASTA domain | This domain is found at the C termini of several Penicillin-binding proteins and bacterial serine/threonine kinases [1]. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. It is a smal ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR036138 | Penicillin-binding protein, dimerisation domain superfamily | Homologous Superfamily | |
IPR005543 | PASTA domain | Domain | |
IPR005311 | Penicillin-binding protein, dimerisation domain | Domain | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain |