Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyLimonene-1 2-epoxide hydrolase-like8021283 4000596 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNTF2-like8033663 3000472 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyNTF2-like8033663 3000472 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASnoaL_1e1nwwA1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: SnoaL_1ECOD (1.6)
BSnoaL_1e1nwwB1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: SnoaL_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
B3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF07858Limonene-1,2-epoxide hydrolase catalytic domain (LEH)Limonene-1,2-epoxide hydrolase catalytic domainEpoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its ...Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzyme's active site [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR032710NTF2-like domain superfamilyHomologous Superfamily
A, B
IPR013100Limonene-1,2-epoxide hydrolaseDomain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
limonene-1,2-epoxide hydrolase  M-CSA #644

Rhodococcus erythropolis is a species of bacteria able to grow on limonene. Its enzyme limonene epoxide hydrolase (LEH) is able to catalyse a key step in this process, namely the hydrolysis of limonene-1-2-epoxide to limonene-1-2-diol. However, the enzyme has a different fold and mechanism to the homologous family of epoxide hydrolases already known to exist, thus represents an example of convergent evolution. In fact, the enzyme bears little structural homology to any known enzyme except for kesosteriod isomerase, which catalyses a completely different reaction. The hydrolysis catalysed by LEH is enantioconvergent, therefore attracting wide interest in industrial applications.

Defined by 5 residues: TYR:A-53ASN:A-55ARG:A-99ASP:A-101ASP:A-132
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