1IPA
CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ipaa1 | Alpha and beta proteins (a/b) | alpha/beta knot | alpha/beta knot | SpoU-like RNA 2'-O ribose methyltransferase | RrmA (RrmH), C-terminal domain | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1ipaa2 | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | L30e-like | RNA 2'-O ribose methyltransferase substrate binding domain | RrmA (RrmH), N-terminal domain | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RNA 2'-O ribose methyltransferase substrate binding domain | 8027231 | 4002711 | SCOP2 (2022-06-29) |
A | SCOP2 Family | SpoU-like RNA 2'-O ribose methyltransferase | 8027230 | 4002340 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | L30e-like | 8039610 | 3001739 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | alpha/beta knot | 8039609 | 3001122 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22435 | e1ipaA1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF22435 | ECOD (1.6) |
A | PF00588 | e1ipaA2 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: PF00588 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
A | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08032 | RNA 2'-O ribose methyltransferase substrate binding (SpoU_sub_bind) | RNA 2'-O ribose methyltransferase substrate binding | This domain is a RNA 2'-O ribose methyltransferase substrate binding domain. | Domain | |
PF00588 | SpoU rRNA Methylase family (SpoU_methylase) | SpoU rRNA Methylase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001537 | tRNA/rRNA methyltransferase, SpoU type | Domain | |
IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | Homologous Superfamily | |
IPR029028 | Alpha/beta knot methyltransferases | Homologous Superfamily | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily | |
IPR013123 | RNA 2-O ribose methyltransferase, substrate binding | Domain |