1CWP

STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth A]	d1cwpa_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)
E [auth B]	d1cwpb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)
F [auth C]	d1cwpc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth A]	SCOP2 Family	Bromoviridae-like VP	8028411	4003474	SCOP2 (2022-06-29)
D [auth A]	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2 (2022-06-29)
E [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth A]	PF01318	e1cwpA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF01318	ECOD (1.6)
E [auth B]	PF01318	e1cwpB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF01318	ECOD (1.6)
F [auth C]	PF01318	e1cwpC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF01318	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth A]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
E [auth B]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
F [auth C]	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth A], E [auth B], F [auth C]	PF01318	Bromovirus coat protein (Bromo_coat)	Bromovirus coat protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], C [auth F]	RNA (5'-R(APUPAPU)-3')	-	-	-
B [auth E]	RNA (5'-R(APU)-3')	-	-	-
D [auth A], E [auth B], F [auth C]	Coat protein	structural molecule activity RNA binding binding organic cyclic compound binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth A], E [auth B], F [auth C]	IPR002009	Bromovirus coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.