1OAI

Complex between Tap UBA domain and FxFG nucleoporin peptide

Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d1oaia_	All alpha proteins	RuvA C-terminal domain-like	UBA-like	TAP-C domain-like	FG-binding, C-terminal domain of TAP	HUMAN (Homo sapiens ) [TaxId: 9606 ]

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

Chain	Domain	Class	Architecture	Topology	Homology
A	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A	PF09162	Tap, RNA-binding (Tap-RNA_bind)	Tap, RNA-binding	Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export o ...	Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element [1].	Domain
A	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain
A	PF03943	TAP C-terminal domain (TAP_C)	TAP C-terminal domain	The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins ( ...	The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [1]. The structure of the C-terminal domain is composed of four helices [1]. The structure is related to the UBA domain.	Domain

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	NUCLEAR RNA EXPORT FACTOR	nucleic acid binding RNA binding mRNA binding binding organic cyclic compound binding heterocyclic compound binding	viral process biological process involved in symbiotic interaction biological process involved in interspecies interaction between organisms	intracellular anatomical structure cytoplasm cellular anatomical entity cytoplasmic stress granule ribonucleoprotein granule cytoplasmic ribonucleoprotein granule organelle non-membrane-bounded organelle intracellular organelle intracellular non-membrane-bounded organelle supramolecular complex cytosol nucleus inclusion body nuclear inclusion body membrane-bounded organelle intracellular membrane-bounded organelle nuclear envelope nuclear pore endomembrane system organelle envelope envelope protein-containing complex nuclear protein-containing complex nucleoplasm nuclear body nuclear speck membrane-enclosed lumen nuclear lumen organelle lumen intracellular organelle lumen
B	FXFG NUCLEOPORIN PEPTIDE	none	none	none

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.