9VIM | pdb_00009vim

Zea mays URE transporter DUR3 - URE bound

PDB DOI: https://doi.org/10.2210/pdb9VIM/pdb
EM Map EMD-65093: EMDB EMDataResource

Classification: CHOLINE-BINDING PROTEIN
Organism(s): Zea mays
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-06-18 Released: 2025-11-05
Deposition Author(s): Wang, Y.L., Lin, H.J., Zhang, J.R., Fan, M.R.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Zea mays URE transporter DUR3 - URE bound

Wang, Y.L., Lin, H.J., Zhang, J.R., Fan, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 328.68 kDa
Atom Count: 18,404
Modeled Residue Count: 2,474
Deposited Residue Count: 3,092
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Urea-proton symporter DUR3	A, B, C, D	773	Zea mays	Mutation(s): 0 Gene Names: DUR3, ZEAMMB73_Zm00001d037242
UniProt
Find proteins for A0A0A0US36 (Zea mays) Explore A0A0A0US36 Go to UniProtKB: A0A0A0US36
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0A0US36
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
URE (Subject of Investigation/LOI) Query on URE Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	UREA C H₄ N₂ O XSQUKJJJFZCRTK-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-11-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDB0630101

Revision History (Full details and data files)

Version 1.0: 2025-11-05
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.