9V0P | pdb_00009v0p

Cryo-EM structure of RSV pre-F in complex with antibody CNR2053

PDB DOI: https://doi.org/10.2210/pdb9V0P/pdb
EM Map EMD-64667: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Homo sapiens, Respiratory syncytial virus A2
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-05-18 Released: 2025-12-31
Deposition Author(s): Zhai, H., Deng, J., Yu, W.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of RSV pre-F in complex with antibody CNR2053

Zhai, H., Deng, J., Yu, W.

To be published.

Macromolecule Content

Total Structure Weight: 262.31 kDa
Atom Count: 15,885
Modeled Residue Count: 2,055
Deposited Residue Count: 2,367
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CNR2053 Heavy Chain	A [auth H], D, G [auth E]	124	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
CNR2053 Light Chain	B [auth L], E [auth F], H [auth G]	112	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
RSV Pre-fusion Protein	C [auth A], F [auth B], I [auth C]	553	Respiratory syncytial virus A2	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2025-12-31

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-12-31
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.