9V0L | pdb_00009v0l

UDP-binding PsBGluT, a tetrahydrobiopterin glucosyltransferase from Pseudanabaena sp. Chao 1811


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.264 (Depositor), 0.263 (DCC) 
  • R-Value Work: 
    0.214 (Depositor), 0.214 (DCC) 
  • R-Value Observed: 
    0.217 (Depositor) 

Starting Model: in silico
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This is version 1.1 of the entry. See complete history


Literature

Structural analysis of the tetrahydrobiopterin glucosyltransferase PsBGluT from Pseudanabaena sp. Chao 1811.

Zang, R.Jiang, Y.Zhou, C.Z.

(2025) Acta Crystallogr F Struct Biol Commun 81: 495-504

  • DOI: https://doi.org/10.1107/S2053230X25009446
  • Primary Citation of Related Structures:  
    9V0L, 9V0W

  • PubMed Abstract: 

    Pterin glycosides are widely distributed in cyanobacteria and have been implicated in the regulation of phototaxis and photosynthesis. Here, we identified a new uridine diphosphate glucose:tetrahydrobiopterin α-glucosyltransferase, termed PsBGluT, from Pseudanabaena sp. Chao 1811, which catalyzes the formation of pterin glycosides. We solved crystal structures of apo PsBGluT and its UDP-bound form at 2.8 and 2.3 Å resolution, respectively. PsBGluT forms a homodimer, with each subunit adopting a canonical GT-B fold composed of two Rossmann-like domains. Structural analysis combined with molecular docking revealed the binding sites for both the donor UDP-glucose and the acceptor tetrahydrobiopterin. Based on these findings, we proposed that PsBGluT operates via an S N i retaining catalytic mechanism. This study advances our understanding of pteridine glycosylation and also provides a structural basis for investigating the photosynthetic signaling pathways in cyanobacteria.


  • Organizational Affiliation
    • Division of Life Sciences and Medicine, University of Science and Technology of China, Huang Shan Road, Hefei, Anhui 230026, People's Republic of China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
tetrahydrobiopterin glucosyltransferases364Pseudanabaena sp. Chao 1811Mutation(s): 0 
UniProt
Find proteins for A0ABX1LL65 (Pseudanabaena yagii GIHE-NHR1)
Explore A0ABX1LL65 
Go to UniProtKB:  A0ABX1LL65
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ABX1LL65
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
UDP (Subject of Investigation/LOI)
Query on UDP

Download Ideal Coordinates CCD File 
B [auth A]URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.264 (Depositor), 0.263 (DCC) 
  • R-Value Work:  0.214 (Depositor), 0.214 (DCC) 
  • R-Value Observed: 0.217 (Depositor) 
Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 176.97α = 90
b = 176.97β = 90
c = 66.171γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
CrysalisProdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32430001

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-26
    Type: Initial release
  • Version 1.1: 2025-12-17
    Changes: Database references