9V0G | pdb_00009v0g

Helical structure of KomBC Complex

• PDB DOI: https://doi.org/10.2210/pdb9V0G/pdb
• EM Map EMD-64664: EMDB EMDataResource

• Classification: CELL INVASION
• Organism(s): Archangium gephyra
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2025-05-17 Released: 2025-12-17 
• Deposition Author(s): Li, Y., Zheng, Q., Li, S.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: HELICAL 

Literature

Helical structure of KomB-KomC Complex

Li, Y., Zheng, Q., Li, S.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Hetero 16-mer - A8B8 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 411.06 kDa 
• Atom Count: 28,816 
• Modeled Residue Count: 3,656 
• Deposited Residue Count: 3,672 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Xanthosine/inosine triphosphate pyrophosphatase	A, B, C [auth L], D [auth K], E [auth I], F [auth J], G [auth C], H [auth D]	181	Archangium gephyra	Mutation(s): 0  Gene Names: AA314_06977
UniProt
Find proteins for A0AAC8QDB0 (Archangium gephyra) Explore A0AAC8QDB0  Go to UniProtKB:  A0AAC8QDB0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD-dependent protein deacetylase	I [auth E], J [auth G], K [auth F], L [auth H], M, N [auth P], O [auth N], P [auth O]	278	Archangium gephyra	Mutation(s): 0  Gene Names: AA314_06978
UniProt
Find proteins for A0AAC8TGL7 (Archangium gephyra) Explore A0AAC8TGL7  Go to UniProtKB:  A0AAC8TGL7

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-12-17 
Deposition Author(s): Li, Y., Zheng, Q., Li, S.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-12-17
  Type: Initial release