9UPG | pdb_00009upg

Cryo-EM structure of human olfactory CNGA2/A4/B1 in CaM-bound closed state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural mechanisms of assembly, gating, and calmodulin modulation of human olfactory CNG channel.

Xue, J.Gan, N.Zeng, W.Jiang, Y.

(2025) Nat Commun 16: 9380-9380

  • DOI: https://doi.org/10.1038/s41467-025-64436-5
  • Primary Citation Related Structures: 
    9UPF, 9UPG

  • PubMed Abstract: 

    Mammalian cyclic nucleotide-gated (CNG) channels play crucial roles in visual and olfactory signal transduction. In olfactory sensory neurons, the native CNG channel functions as a heterotetramer consisting of CNGA2, CNGA4, and CNGB1b subunits and is activated by cAMP. Calmodulin (CaM) modulates the activity of the olfactory CNG channel, enabling rapid adaptation to odorants. Here we present cryo-EM structures of the native human olfactory CNGA2/A4/B1b channel in both CaM-bound closed and cAMP-bound open states, elucidating the molecular basis of the 2:1:1 subunit stoichiometry in channel assembly and the asymmetrical channel gating upon cAMP activation. Combining structural and functional analyses with AlphaFold prediction, we define two distinct CaM binding sites (CaM1 and CaM2) on the N- and C-terminal regions of CNGB1b, respectively, shedding light on the molecular mechanism of Ca 2+ /CaM-mediated rapid inhibition of the native olfactory CNG channel.


  • Organizational Affiliation
    • Howard Hughes Medical Institute and Department of Physiology, University of Texas Southwestern Medical Center, Dallas, TX, USA. jxue@shsmu.edu.cn.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated channel alpha-2
A, C
664Homo sapiensMutation(s): 0 
Gene Names: CNGA2CNCACNCA1CNCG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q16280 (Homo sapiens)
Explore Q16280 
Go to UniProtKB:  Q16280
PHAROS:  Q16280
GTEx:  ENSG00000183862 
Entity Groups  
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UniProt GroupQ16280
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated channel alpha-4B [auth D]575Homo sapiensMutation(s): 0 
Gene Names: CNGA4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IV77 (Homo sapiens)
Explore Q8IV77 
Go to UniProtKB:  Q8IV77
PHAROS:  Q8IV77
GTEx:  ENSG00000132259 
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UniProt GroupQ8IV77
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated channel beta-1D [auth B]1,251Homo sapiensMutation(s): 0 
Gene Names: CNGB1CNCG2CNCG3LCNCG4RCNC2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q14028 (Homo sapiens)
Explore Q14028 
Go to UniProtKB:  Q14028
PHAROS:  Q14028
GTEx:  ENSG00000070729 
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UniProt GroupQ14028
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Calmodulin-1E [auth H]149Homo sapiensMutation(s): 0 
Gene Names: CALM1CALMCAMCAM1
UniProt & NIH Common Fund Data Resources
Find proteins for P0DP23 (Homo sapiens)
Explore P0DP23 
Go to UniProtKB:  P0DP23
PHAROS:  P0DP23
GTEx:  ENSG00000198668 
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UniProt GroupP0DP23
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-24
    Type: Initial release
  • Version 1.1: 2026-04-08
    Changes: Data collection, Database references