9UOB | pdb_00009uob

Plant-TaNNS


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Recognition of a phytocytokine by the DEPR1-SERK2 receptor complex confers multi-pathogen resistance in wheat.

Wang, L.Zhao, J.Yin, C.Li, H.Xiao, Y.Du, C.Lu, Z.Zhang, Y.Jia, F.Hao, J.Yan, J.Zhang, Y.Li, J.Ding, X.Han, Z.Cui, H.Chai, J.Deng, X.Chi, C.Hou, S.

(2025) Mol Plant 18: 1999-2017

  • DOI: https://doi.org/10.1016/j.molp.2025.10.005
  • Primary Citation of Related Structures:  
    9UOB

  • PubMed Abstract: 

    The recognition of plant-derived immunogenic peptides, known as phytocytokines (PCKs), by cell surface receptors triggers immune signaling pathways that bolster basal plant defense against pathogens. However, little is known about the molecular mechanisms that underlie PCK-mediated immune regulation in wheat. In this study, we identified a wheat PCK, delta-like PCK (DEP), that robustly activates immune responses and confers multi-pathogen resistance. DEP is perceived by the leucine-rich repeat (LRR) receptor kinases (RKs) DEP RECEPTOR 1 (DEPR1) and SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2 (SERK2) and triggers DEPR1- and SERK2-dependent immune signaling. Cryogenic electron microscopy structural analysis revealed that DEP2 binds to the extracellular LRR domain of DEPR1 and recruits SERK2 through a disulfide-bond-stabilized loop to promote DEPR1-SERK2 heterodimerization. Furthermore, we showed that the DEP2-DEPR1-SERK2 module confers wheat resistance to Xanthomonas translucens, Fusarium graminearum, and Fusarium pseudograminearum. We also demonstrated that this module enhances wheat resistance to X. translucens by antagonizing abscisic acid signaling. Collectively, our study reveals a novel PCK-mediated immune signaling pathway and suggests a promising strategy for engineering multi-pathogen resistance in wheat.


  • Organizational Affiliation
    • State Key Laboratory of Wheat Improvement, Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, China; College of Plant Protection, Shandong Agricultural University, Tai'an, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein kinase domain-containing protein581Triticum aestivumMutation(s): 0 
Gene Names: CFC21_042032
UniProt
Find proteins for A0A9R1FL93 (Triticum aestivum)
Explore A0A9R1FL93 
Go to UniProtKB:  A0A9R1FL93
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A9R1FL93
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Somatic embryogenesis receptor kinase 1187Triticum aestivumMutation(s): 0 
Gene Names: SERK1CFC21_017799
EC: 2.7.11.1
UniProt
Find proteins for A0A9R1E1Y6 (Triticum aestivum)
Explore A0A9R1E1Y6 
Go to UniProtKB:  A0A9R1E1Y6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A9R1E1Y6
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
TaNNS-C27Triticum aestivumMutation(s): 0 
Gene Names: CFC21_011643
UniProt
Find proteins for A0A9R1IWD2 (Triticum aestivum)
Explore A0A9R1IWD2 
Go to UniProtKB:  A0A9R1IWD2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A9R1IWD2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32472567

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-10
    Type: Initial release