9UKY | pdb_00009uky

Crystal structure of dmCIAO1-CIAO2B-hCDKAL1 pentapeptide complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.232 (Depositor), 0.234 (DCC) 
  • R-Value Work: 
    0.171 (Depositor), 0.175 (DCC) 
  • R-Value Observed: 
    0.174 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Client recruitment mechanism of the cytosolic Fe-S cluster assembly targeting complex.

Ren, W.Huang, Y.Hu, M.Yang, Y.Yang, W.Wang, H.

(2026) EMBO J 45: 1264-1291

  • DOI: https://doi.org/10.1038/s44318-025-00676-x
  • Primary Citation Related Structures: 
    9UKY

  • PubMed Abstract: 

    Most cytosolic and nuclear eukaryotic Fe-S proteins acquire their critical Fe-S cofactor by interacting with the cytosolic Fe-S cluster assembly targeting complex (CTC). Despite the critical roles these Fe-S proteins play in fundamental biology, how they are specifically recognized by the CTC remains largely understudied. Here we identified a hidden consensus pentapeptide motif as a sequence signature dictating cluster acquisition in a majority of known human Fe-S proteins, particularly DNA/RNA processing enzymes for genome maintenance. The presence of this motif drives CTC-client engagement, while its defect impairs CTC recognition, iron incorporation, and enzymatic activities of these clients, ultimately compromising their cellular functions, such as in DNA repair. Furthermore, our studies revealed a conserved surface pocket of CTC dedicated to client recruitment in general. This single pocket recognizes two distinct sequence signatures in clients including the Pentapeptide motif and a previously reported C-tail motif. Subsequent structure-guided affinity-purification mass spectrometry (AP-MS) enabled us to investigate the pocket-dependent human CTC interactome, potentially unveiling unrecognized Fe-S proteins. Overall, our findings decipher the sequence signature-directed mechanism underlying CTC client recruitment and open an avenue for expanding the repertoire of Fe-S proteins.


  • Organizational Affiliation
    • Greater Bay Biomedical InnoCenter, Shenzhen Bay Laboratory, Shenzhen, 518132, China.

Macromolecule Content 

  • Total Structure Weight: 54.86 kDa 
  • Atom Count: 3,696 
  • Modeled Residue Count: 466 
  • Deposited Residue Count: 493 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MIP18 family protein galla-2157Drosophila melanogasterMutation(s): 2 
Gene Names: galla-2CG7949
UniProt
Find proteins for Q9VTC4 (Drosophila melanogaster)
Explore Q9VTC4 
Go to UniProtKB:  Q9VTC4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VTC4
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Probable cytosolic iron-sulfur protein assembly protein Ciao1336Drosophila melanogasterMutation(s): 0 
Gene Names: Ciao1CG12797
UniProt
Find proteins for Q7K1Y4 (Drosophila melanogaster)
Explore Q7K1Y4 
Go to UniProtKB:  Q7K1Y4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7K1Y4
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.232 (Depositor), 0.234 (DCC) 
  • R-Value Work:  0.171 (Depositor), 0.175 (DCC) 
  • R-Value Observed: 0.174 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 162.977α = 90
b = 74.856β = 99.16
c = 47.867γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
PDB_EXTRACTdata extraction
Cootmodel building
HKL-2000data reduction

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentChina21320081

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release
  • Version 1.1: 2026-07-08
    Changes: Database references