9RZF | pdb_00009rzf

Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Synthetic alpha-synuclein fibrils replicate in mice causing MSA-like pathology.

Burger, D.Kashyrina, M.van den Heuvel, L.de La Seigliere, H.Lewis, A.J.De Nuccio, F.Mohammed, I.Verchere, J.Feuillie, C.Berbon, M.Arotcarena, M.L.Retailleau, A.Bezard, E.Canron, M.H.Meissner, W.G.Loquet, A.Bousset, L.Poujol, C.Nilsson, K.P.R.Laferriere, F.Baron, T.Lofrumento, D.D.De Giorgi, F.Stahlberg, H.Ichas, F.

(2025) Nature 

  • DOI: https://doi.org/10.1038/s41586-025-09698-1
  • Primary Citation of Related Structures:  
    9EUU, 9RZF

  • PubMed Abstract: 

    Multiple-system atrophy (MSA) is a rapidly progressive neurodegenerative disease of unknown cause, typically affecting individuals aged 50-60 years and leading to death within a decade 1-3 . It is characterized by glial cytoplasmic inclusions (GCIs) composed of fibrillar α-synuclein (aSyn) 4-8 , the formation of which shows parallels with prion propagation 9,10 . While fibrils extracted from brains of individuals with MSA have been structurally characterized 11 , their ability to replicate in a protein-only manner has been questioned 12 , and their ability to induce GCIs in vivo remains unexplored. By contrast, the synthetic fibril strain 1B 13,14 , assembled from recombinant human aSyn, self-replicates in vitro and induces GCIs in mice 15 -suggesting direct relevance to MSA-but lacks scrutiny at the atomic scale. Here we report high-resolution structural analyses of 1B fibrils and of fibrils extracted from diseased mice injected with 1B that developed GCIs (1B P ). We show in vivo that conformational templating enables fibril strain replication, resulting in MSA-like inclusion pathology. Notably, the structures of 1B and 1B P are highly similar and mimic the fold of aSyn observed in one protofilament of fibrils isolated from patients with MSA 11 . Moreover, reinjection of crude mouse brain homogenates containing 1B P into new mice reproduces the same MSA-like pathology induced by the parent synthetic seed 1B. Our findings identify 1B as a synthetic pathogen capable of self-replication in vivo and reveal structural features of 1B and 1B P that may underlie MSA pathology, offering insights for therapeutic strategies.


  • Organizational Affiliation
    • Laboratory of Biological Electron Microscopy, Institute of Physics, School of Basic Science, EPFL, Lausanne, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-synuclein
A, B, C, D, E
A, B, C, D, E, F
61Homo sapiensMutation(s): 1 
Gene Names: SNCANACPPARK1
UniProt & NIH Common Fund Data Resources
Find proteins for O55042 (Mus musculus)
Explore O55042 
Go to UniProtKB:  O55042
IMPC:  MGI:1277151
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO55042
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0.0
MODEL REFINEMENTPHENIX1.21.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerlandIC00I0L-231578
Agence Nationale de la Recherche (ANR)FranceANR-24-CE93-0003

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2025-08-13
    Changes: Data collection, Database references
  • Version 1.2: 2025-09-24
    Changes: Data collection, Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2025-11-05
    Changes: Data collection, Database references
  • Version 1.4: 2025-11-19
    Changes: Data collection, Database references