9R78 | pdb_00009r78

Human Adenovirus D 10 Capsid Structure


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Identification of a novel fiber shaft structural motif and overexpression of key transcripts elucidated in human adenovirus D 10.

Mundy, R.M.Waraich, K.Bates, E.A.Rizkallah, P.J.Baker, A.T.Young, M.T.Morris, E.da Fonseca, P.C.A.Bliss, C.M.Matthews, D.Bhella, D.Parker, A.L.

(2026) PLoS Pathog 22: e1014182-e1014182

  • DOI: https://doi.org/10.1371/journal.ppat.1014182
  • Primary Citation Related Structures: 
    9R78

  • PubMed Abstract: 

    Adenoviruses are widely used as vectors for subunit vaccines and oncolytic therapies. Efficient vectors must infect target cells and deliver therapeutic transgenes at high levels. Species D adenoviruses, such as human adenovirus type 10 (HAdV-D10), are promising candidates due to low seroprevalence in humans. Here, we present the cryo-electron microscopy structure of the HAdV-D10 capsid alongside transcriptomic profiling of infected cells to inform vector development. The fiber shaft, essential for cell entry, was resolved at 10 Å, revealing a previously uncharacterized 'umbrella' motif. Viral transcript analysis using an ORF-centric pipeline uncovered key differences from HAdV-C5, including abundant expression of a transcript encoding a protein equivalent to mature protein VII. These findings highlight the importance of detailed vector characterization prior to clinical translation and support the advancement of HAdV-D10 as a next-generation platform for gene delivery and vaccine development.


  • Organizational Affiliation
    • Division of Cancer and Genetics, Cardiff University School of Medicine, Cardiff, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 1,704.81 kDa 
  • Atom Count: 101,221 
  • Modeled Residue Count: 12,737 
  • Deposited Residue Count: 15,232 
  • Unique protein chains: 6

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pre-protein VI234Human adenovirus D10Mutation(s): 0 
Gene Names: L3
UniProt
Find proteins for K7ZRR7 (Human adenovirus D10)
Explore K7ZRR7 
Go to UniProtKB:  K7ZRR7
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UniProt GroupK7ZRR7
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Hexon protein941Human adenovirus D10Mutation(s): 0 
Gene Names: L3
UniProt
Find proteins for K7ZJY8 (Human adenovirus D10)
Explore K7ZJY8 
Go to UniProtKB:  K7ZJY8
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UniProt GroupK7ZJY8
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Penton proteinU [auth M]519Human adenovirus D10Mutation(s): 0 
Gene Names: L2
UniProt
Find proteins for K7ZQ23 (Human adenovirus D10)
Explore K7ZQ23 
Go to UniProtKB:  K7ZQ23
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UniProt GroupK7ZQ23
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Pre-hexon-linking protein IIIaV [auth N]559Human adenovirus D10Mutation(s): 0 
Gene Names: L1
UniProt
Find proteins for K7ZMX4 (Human adenovirus D10)
Explore K7ZMX4 
Go to UniProtKB:  K7ZMX4
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UniProt GroupK7ZMX4
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Pre-hexon-linking protein VIIIW [auth O],
X [auth P]
227Human adenovirus D10Mutation(s): 0 
Gene Names: L4
UniProt
Find proteins for K7ZJY9 (Human adenovirus D10)
Explore K7ZJY9 
Go to UniProtKB:  K7ZJY9
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UniProt GroupK7ZJY9
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Hexon-interlacing proteinAA [auth S],
BA [auth T],
Y [auth Q],
Z [auth R]
134Human adenovirus D10Mutation(s): 0 
Gene Names: pIXIX
UniProt
Find proteins for K7ZLM2 (Human adenovirus D10)
Explore K7ZLM2 
Go to UniProtKB:  K7ZLM2
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UniProt GroupK7ZLM2
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTISOLDE
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release
  • Version 1.1: 2026-05-13
    Changes: Data collection, Database references