9QD1 | pdb_00009qd1

Structure of J paramyxovirus virus receptor binding protein

  • Classification: VIRAL PROTEIN
  • Organism(s): J virus
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2025-03-05 Released: 2025-11-19 
  • Deposition Author(s): Stelfox, A.J., Bowden, T.A.
  • Funding Organization(s): Medical Research Council (MRC, United Kingdom), Engineering and Physical Sciences Research Council, Wellcome Trust

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.207 (Depositor), 0.207 (DCC) 
  • R-Value Work: 
    0.189 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 
    0.190 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure of the Jeilongvirus Receptor Binding Receptor Protein Provides a Molecular Basis for Elongation of the Paramyxoviral C-terminus

Stelfox, A.J., Javorsky, A., Stass, R., Sutton, G., El Omari, K., Bowden, T.A.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Attachment glycoprotein
A, B
435J virusMutation(s): 0 
UniProt
Find proteins for Q49HN3 (J virus)
Explore Q49HN3 
Go to UniProtKB:  Q49HN3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ49HN3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.207 (Depositor), 0.207 (DCC) 
  • R-Value Work:  0.189 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 0.190 (Depositor) 
Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 164.24α = 90
b = 164.24β = 90
c = 112.47γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/L009528/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S007555/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/K503113/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/L505031/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/M50659X/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/M508111/1
Wellcome TrustUnited Kingdom203141/Z/16Z

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release