9P6K | pdb_00009p6k

Colorado Potato Beetle Glutathione S-transferase Sigma Class member 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 
    0.268 (Depositor), 0.268 (DCC) 
  • R-Value Work: 
    0.221 (Depositor), 0.221 (DCC) 
  • R-Value Observed: 
    0.225 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

Crystal structure and ligand binding of a sigma-class glutathione S-transferase associated with cross-resistance in a specialist herbivore.

Moural, T.W.Hernandez, J.A.Chen, Q.R.Koirala Bk, S.Liu, Y.Cofer, T.M.Zuo, I.X.Alyokhin, A.Wang, H.Zhu, F.

(2025) Int J Biol Macromol 323: 147108-147108

  • DOI: https://doi.org/10.1016/j.ijbiomac.2025.147108
  • Primary Citation of Related Structures:  
    9P6K

  • PubMed Abstract: 

    Understanding the molecular mechanisms underlying insect adaptation is critical for elucidating the evolution of pesticide resistance and improving pest management strategies. While host plant preadaptation has been proposed to facilitate insecticide resistance, direct evidence remains limited. Here, we investigated a sigma-class glutathione S-transferase (GST), LdGSTs2, in the Colorado potato beetle (Leptinotarsa decemlineata), a major agricultural pest. LdGSTs2 is significantly overexpressed in an imidacloprid-resistant strain and induced by host plant allelochemicals. Silencing LdGSTs2 via RNA interference increased susceptibility to imidacloprid, supporting its functional role in resistance. Ligand-binding assays using 8-anilinonaphthalene-1-sulfonic acid (ANS) revealed that LdGSTs2 interacts with a broad range of insecticides and potato-derived phytochemicals. We further solved the 3D crystal structure of LdGSTs2 and performed molecular docking, which identified key residues involved in ligand interactions. These findings demonstrate that LdGSTs2 may contribute to cross-resistance by binding both synthetic and natural xenobiotics, without direct evidence of metabolic detoxification. Our results provide new mechanistic insights into how sigma-class GSTs facilitate adaptation to environmental toxins and highlight a potential molecular link between host plant use and insecticide resistance in specialist herbivores.


  • Organizational Affiliation
    • Department of Entomology, Pennsylvania State University, University Park, PA 16802, USA. Electronic address: twm78@psu.edu.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
glutathione transferase
A, B, C, D
221Leptinotarsa decemlineataMutation(s): 0 
EC: 2.5.1.18
UniProt
Find proteins for A0A1P8PEX1 (Leptinotarsa decemlineata)
Explore A0A1P8PEX1 
Go to UniProtKB:  A0A1P8PEX1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1P8PEX1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free:  0.268 (Depositor), 0.268 (DCC) 
  • R-Value Work:  0.221 (Depositor), 0.221 (DCC) 
  • R-Value Observed: 0.225 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.372α = 90
b = 88.781β = 99.73
c = 97.902γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
Aimlessdata scaling
PHENIXphasing
Cootmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States2144082
United States Department of Agriculture (USDA)United States2020-67034-31780

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-08
    Type: Initial release