9OH9 | pdb_00009oh9

Human Stomatin Complex in Native Membrane Vesicles

PDB DOI: https://doi.org/10.2210/pdb9OH9/pdb
EM Map EMD-70485: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-05-03 Released: 2025-08-13
Deposition Author(s): Stoner, J., Fu, Z.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Human Stomatin Complex in Native Membrane Vesicles at 2.2 Angstroms Resolution

Stoner, J., Fu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 543.57 kDa
Atom Count: 32,670
Modeled Residue Count: 4,096
Deposited Residue Count: 4,928
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stomatin	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	308	Homo sapiens	Mutation(s): 0 Gene Names: STOM, BND7, EPB72
UniProt & NIH Common Fund Data Resources
Find proteins for P27105 (Homo sapiens) Explore P27105 Go to UniProtKB: P27105
PHAROS: P27105 GTEx: ENSG00000148175
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P27105
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA (Subject of Investigation/LOI) Query on NA Download Ideal Coordinates CCD File SDF format, chain Z [auth J] SDF format, chain Y [auth I] SDF format, chain X [auth H] SDF format, chain W [auth G] SDF format, chain V [auth F] SDF format, chain U [auth E] SDF format, chain T [auth D] SDF format, chain S [auth C] SDF format, chain R [auth B] SDF format, chain Q [auth A] SDF format, chain FA [auth P] SDF format, chain EA [auth O] SDF format, chain DA [auth N] SDF format, chain CA [auth M] SDF format, chain BA [auth L] SDF format, chain AA [auth K] MOL2 format, chain Z [auth J] MOL2 format, chain Y [auth I] MOL2 format, chain X [auth H] MOL2 format, chain W [auth G] MOL2 format, chain V [auth F] MOL2 format, chain U [auth E] MOL2 format, chain T [auth D] MOL2 format, chain S [auth C] MOL2 format, chain R [auth B] MOL2 format, chain Q [auth A] MOL2 format, chain FA [auth P] MOL2 format, chain EA [auth O] MOL2 format, chain DA [auth N] MOL2 format, chain CA [auth M] MOL2 format, chain BA [auth L] MOL2 format, chain AA [auth K] mmCIF format, chain Z [auth J] mmCIF format, chain Y [auth I] mmCIF format, chain X [auth H] mmCIF format, chain W [auth G] mmCIF format, chain V [auth F] mmCIF format, chain U [auth E] mmCIF format, chain T [auth D] mmCIF format, chain S [auth C] mmCIF format, chain R [auth B] mmCIF format, chain Q [auth A] mmCIF format, chain FA [auth P] mmCIF format, chain EA [auth O] mmCIF format, chain DA [auth N] mmCIF format, chain CA [auth M] mmCIF format, chain BA [auth L] mmCIF format, chain AA [auth K]	AA [auth K] BA [auth L] CA [auth M] DA [auth N] EA [auth O] AA [auth K], BA [auth L], CA [auth M], DA [auth N], EA [auth O], FA [auth P], Q [auth A], R [auth B], S [auth C], T [auth D], U [auth E], V [auth F], W [auth G], X [auth H], Y [auth I], Z [auth J]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain AA [auth K] Focus chain BA [auth L] Focus chain CA [auth M] Focus chain DA [auth N] Focus chain EA [auth O] Focus chain FA [auth P] Focus chain Q [auth A] Focus chain R [auth B] Focus chain S [auth C] Focus chain T [auth D] Focus chain U [auth E] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth I] Focus chain Z [auth J] Interactions & Density Focus chain AA [auth K] Focus chain BA [auth L] Focus chain CA [auth M] Focus chain DA [auth N] Focus chain EA [auth O] Focus chain FA [auth P] Focus chain Q [auth A] Focus chain R [auth B] Focus chain S [auth C] Focus chain T [auth D] Focus chain U [auth E] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth I] Focus chain Z [auth J]