9O9D | pdb_00009o9d

Transporter associated with antigen processing (TAP) EQ mutant bound to the viral protein bUL49.5 in the outward-facing unkinked state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structurally diverse viral inhibitors converge on a shared mechanism to stall the antigen transporter TAP.

Lee, J.Manon, V.Chen, J.

(2025) Proc Natl Acad Sci U S A 122: e2516676122-e2516676122

  • DOI: https://doi.org/10.1073/pnas.2516676122
  • Primary Citation of Related Structures:  
    9O94, 9O9D, 9OCG, 9OCH, 9OCI, 9OCJ

  • PubMed Abstract: 

    In the host-pathogen arms race, herpesviruses and poxviruses encode proteins that sabotage the transporter associated with antigen processing (TAP), thereby suppressing MHC-I antigen presentation and enabling lifelong infection. Of the five known viral TAP inhibitors, only the herpes simplex virus (HSV) protein ICP47 has been structurally resolved. We now report cryoelectron microscopy structures of TAP in complex with the remaining four: BNLF2a (Epstein-Barr virus), hUS6 (human cytomegalovirus), bUL49.5 (bovine herpesvirus 1), and CPXV012 (cowpox virus), assembling a structural atlas of viral TAP evasion. Despite employing divergent sequences, folds, and conformational targets, these viral inhibitors converge on a common strategy: they stall TAP from the alternating access cycle, precluding peptide entry into the ER and shielding infected cells from cytotoxic T cell surveillance. These findings reveal striking functional convergence and provide a structural framework for rational antiviral design.


  • Organizational Affiliation
    • Laboratory of Membrane Biophysics and Biology, The Rockefeller University, New York, NY 10065.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antigen peptide transporter 1907Homo sapiensMutation(s): 0 
Gene Names: TAP1ABCB2PSF1RING4Y3
EC: 7.4.2.14
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q03518 (Homo sapiens)
Explore Q03518 
Go to UniProtKB:  Q03518
PHAROS:  Q03518
GTEx:  ENSG00000168394 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03518
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antigen peptide transporter 2686Homo sapiensMutation(s): 1 
Gene Names: TAP2ABCB3PSF2RING11Y1
EC: 7.4.2.14
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q03519 (Homo sapiens)
Explore Q03519 
Go to UniProtKB:  Q03519
PHAROS:  Q03519
GTEx:  ENSG00000204267 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03519
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein NC [auth D]25bovine alphaherpesvirus 1Mutation(s): 0 
Gene Names: UL49.5
Membrane Entity: Yes 
UniProt
Find proteins for Q77CE4 (Bovine herpesvirus 1.1 (strain Cooper))
Explore Q77CE4 
Go to UniProtKB:  Q77CE4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ77CE4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release
  • Version 1.1: 2026-03-18
    Changes: Data collection, Database references