9O0H | pdb_00009o0h

The ubiquitin-associated domain of human thirty-eight negative kinase 1, fused to the 3TEL crystallization chaperone via a 2-glycine linker

• PDB DOI: https://doi.org/10.2210/pdb9O0H/pdb

• Classification: ONCOPROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2025-04-02 Released: 2025-04-30 
• Deposition Author(s): Samarawickrama, P., Pedroza Romo, M.J., Ludlow, K., Keliiliki, A., Doukov, T., Moody, J.D.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.24 Å
• R-Value Free: 
  0.249 (Depositor), 0.249 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.224 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Starting Model: experimental

Literature

1TEL Fusions Outperform 2TEL and 3TEL Fusions in Controlled Comparisons

Samarawickrama, P., Ludlow, K., Probst, R., Mead, D., Doukov, T., Moody, J.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 37.6 kDa 
• Atom Count: 2,470 
• Modeled Residue Count: 306 
• Deposited Residue Count: 325 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor ETV6,Non-receptor tyrosine-protein kinase TNK1	A [auth B]	325	Homo sapiens	Mutation(s): 3  Gene Names: ETV6, TEL, TEL1, TNK1 EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P41212 (Homo sapiens) Explore P41212  Go to UniProtKB:  P41212
PHAROS:  P41212 GTEx:  ENSG00000139083
Find proteins for Q13470 (Homo sapiens) Explore Q13470  Go to UniProtKB:  Q13470
PHAROS:  Q13470 GTEx:  ENSG00000174292
UniProt Groups	P41212Q13470

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.24 Å
• R-Value Free:  0.249 (Depositor), 0.249 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.224 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M39O0H

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.152	α = 90
b = 65.54	β = 90
c = 112.902	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-30 
Deposition Author(s): Samarawickrama, P., Pedroza Romo, M.J., Ludlow, K., Keliiliki, A., Doukov, T., Moody, J.D.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R15GM146209-01
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R35GM155011-01

Revision History  

• Version 1.0: 2025-04-30
  Type: Initial release