9NZ6 | pdb_00009nz6

Oxidoreductase isolated from Xanthomonas citri pv. citri A306

• PDB DOI: https://doi.org/10.2210/pdb9NZ6/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Xanthomonas citri pv. citri
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2025-03-31 Released: 2025-04-09 
• Deposition Author(s): Santos, L.S., Torres, S.C., Balan, A.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.98 Å
• R-Value Free: 
  0.276 (Depositor), 0.278 (DCC) 
• R-Value Work: 
  0.231 (Depositor), 0.233 (DCC) 
• R-Value Observed: 
  0.235 (Depositor) 

Starting Model: in silico

Literature

Oxidoreductase isolated from Xanthomonas citri pv. citri A306

Santos, L.S., Torres, S.C., Balan, A.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D4  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration, SAXS

Macromolecule Content 

• Total Structure Weight: 322.39 kDa 
• Atom Count: 19,052 
• Modeled Residue Count: 2,439 
• Deposited Residue Count: 2,920 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidoreductase	A, B, C, D, E, F, G, H	365	Xanthomonas citri pv. citri	Mutation(s): 0  Gene Names: XAC3199
UniProt
Find proteins for A0AAI7ZHB9 (Xanthomonas axonopodis pv. citri (strain 306)) Explore A0AAI7ZHB9  Go to UniProtKB:  A0AAI7ZHB9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.98 Å
• R-Value Free:  0.276 (Depositor), 0.278 (DCC) 
• R-Value Work:  0.231 (Depositor), 0.233 (DCC) 
• R-Value Observed: 0.235 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 129.62	α = 90
b = 129.756	β = 90
c = 228.937	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-09 
Deposition Author(s): Santos, L.S., Torres, S.C., Balan, A.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2023/15874-8

Revision History  

• Version 1.0: 2025-04-09
  Type: Initial release