9NVH | pdb_00009nvh

NMR structure of conotoxin k-SrXIA


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Block of Kv1 potassium channels and NMR structure of recombinant conotoxin kappa-SrXIA.

Escobar, L.I.Quezada Suaste, C.D.Salvador, C.Aparicio, D.L.Melchor-Meneses, C.M.Bravo-Martinez, J.de la Rosa, V.Lopez-Gonzalez, Z.Del Rio-Portilla, F.

(2025) Toxicon 262: 108384-108384

  • DOI: https://doi.org/10.1016/j.toxicon.2025.108384
  • Primary Citation of Related Structures:  
    9NVH

  • PubMed Abstract: 

    The biologically active components of Conus venoms are mainly small peptides with disulfide-bonded structures. Some conotoxins contain post-translational modifications as an evolutionary strategy to enhance their potency and selectivity towards ion channels and receptors. Few conotoxins are known to target mammalian Kv1 channels. κ-SrXIA from the venom of Conus spurius inhibits the voltage-gated potassium Kv1.2 and Kv1.6 channels through a basic ring of Arg. The 32 amino acid κ-SrXIA has eight Cys residues arranged in the pattern that defines the I-superfamily with four disulfide bridges, two gamma-carboxy-glutamates (Gla), and a Pro-amidated C-terminus (X). In this study, we obtained and determined the biological activity and NMR structure of recombinant κ-SrXIA without Gla and X. The conotoxin cDNA was expressed in E. coli CD41 and purified by GST-affinity chromatography and RP-HPLC. Pharmacological assays were performed by two-electrode voltage-clamp recordings in Xenopus laevis oocytes expressing recombinant Kv1.1, Kv1.2, Kv1.3, Kv1.4 and Kv1.6 channels. Except for Kv1.3, κ-Sr-XIA irreversibly blocked Kv1 channels displaying a lower affinity and a slower inhibition kinetics than native conotoxin. Even when κ-SrXIA displayed a high structural similarity to GXIA from the I 3 -superfamily, the resultant disulfide connectivity forming an ICK+1 motif showed two antiparallel β-strands as ι-RXIA from the I 1 -superfamily. This study represents the first 3D NMR structure for a member of the I 2 -superfamily.


  • Organizational Affiliation
    • Departamento de Fisiología, Facultad de Medicina, Universidad Nacional Autónoma de México, Circuito Interior, México City, 04510, Mexico. Electronic address: laurae@unam.mx.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kappa-conotoxin SrXIA35Conus spuriusMutation(s): 0 
UniProt
Find proteins for P0C615 (Conus spurius)
Explore P0C615 
Go to UniProtKB:  P0C615
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C615
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT)MexicoIN214722

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-14
    Type: Initial release
  • Version 1.1: 2025-05-21
    Changes: Database references