9NPS | pdb_00009nps

Deposited: 2025-03-11 Released: 2025-12-31
Deposition Author(s): Ye, G., Bu, F., Liu, B., Li, F.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Ye, G., Bu, F., Liu, B., Li, F.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein RAVV GP1	A [auth K] C [auth G] E [auth I] G [auth E] I [auth C] A [auth K], C [auth G], E [auth I], G [auth E], I [auth C], K [auth A]	256	Ravn virus - Ravn, Kenya, 1987	Mutation(s): 0 Gene Names: GP
UniProt
Find proteins for Q1PDC7 (Lake Victoria marburgvirus (strain Ravn-87)) Explore Q1PDC7 Go to UniProtKB: Q1PDC7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1PDC7
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A [auth K] Focus chain C [auth G] Focus chain E [auth I] Focus chain G [auth E] Focus chain I [auth C] Focus chain K [auth A]
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein RAVV GP2	B [auth L] D [auth H] F [auth J] H [auth F] J [auth D] B [auth L], D [auth H], F [auth J], H [auth F], J [auth D], L [auth B]	246	Ravn virus - Ravn, Kenya, 1987	Mutation(s): 0 Gene Names: GP
UniProt
Find proteins for Q1PDC7 (Lake Victoria marburgvirus (strain Ravn-87)) Explore Q1PDC7 Go to UniProtKB: Q1PDC7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1PDC7
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain B [auth L] Focus chain D [auth H] Focus chain F [auth J] Focus chain H [auth F] Focus chain J [auth D] Focus chain L [auth B]
Sequence Annotations Expand
Reference Sequence

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S], R [auth T]	3		N-Glycosylation	Interactions Focus chain M [auth O] Focus chain N [auth P] Focus chain O [auth Q] Focus chain P [auth R] Focus chain Q [auth S] Focus chain R [auth T] Interactions & Density Focus chain M [auth O] Focus chain N [auth P] Focus chain O [auth Q] Focus chain P [auth R] Focus chain Q [auth S] Focus chain R [auth T]
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	S [auth U], T [auth V], U [auth W], V [auth X], W [auth Y], S [auth U], T [auth V], U [auth W], V [auth X], W [auth Y], X [auth Z]	5		N-Glycosylation	Interactions Focus chain S [auth U] Focus chain T [auth V] Focus chain U [auth W] Focus chain V [auth X] Focus chain W [auth Y] Focus chain X [auth Z] Interactions & Density Focus chain S [auth U] Focus chain T [auth V] Focus chain U [auth W] Focus chain V [auth X] Focus chain W [auth Y] Focus chain X [auth Z]
Glycosylation Resources
GlyTouCan: G22768VO GlyCosmos: G22768VO GlyGen: G22768VO

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.1_5286:

& Funding Information

Deposition Author(s):

Ye, G.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI089728
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI171954