9NCF | pdb_00009ncf

Icosahedral capsid assembly of phage JohannRWettstein (Bas63)

• PDB DOI: https://doi.org/10.2210/pdb9NCF/pdb
• EM Map EMD-49251: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Escherichia phage JohannRWettstein
• Mutation(s): No 


• Deposited: 2025-02-16 Released: 2025-11-19 
• Deposition Author(s): Hodgkinson-Bean, J.
• Funding Organization(s): Ministry of Agriculture, Forestry and Fisheries (MAFF), Japan Society for the Promotion of Science (JSPS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Icosahedral capsid assembly of phage JohannRWettstein (Bas63)

Hodgkinson-Bean, J., Ayala, R., McJarrow-Keller, K., Cassin, L., Rutter, G.L., Crowe, A.J.M., Wolf, M., Bostina, M.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 1140-mer - A540B540C60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 544.86 kDa 
• Atom Count: 35,114 
• Modeled Residue Count: 4,521 
• Deposited Residue Count: 4,897 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A, B, C, D, E, F, G, H, I	368	Escherichia phage JohannRWettstein	Mutation(s): 0
UniProt
Find proteins for A0AAE8B2A4 (Escherichia phage JohannRWettstein) Explore A0AAE8B2A4  Go to UniProtKB:  A0AAE8B2A4

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Head stabilization/decoration protein	J, K, L, M, N, O, P, Q, R	125	Escherichia phage JohannRWettstein	Mutation(s): 0
UniProt
Find proteins for A0AAE8B0J2 (Escherichia phage JohannRWettstein) Explore A0AAE8B0J2  Go to UniProtKB:  A0AAE8B0J2

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunoglobulin-like domain protein	S	460	Escherichia phage JohannRWettstein	Mutation(s): 0
UniProt
Find proteins for A0AAE7VUZ0 (Escherichia phage JohannRWettstein) Explore A0AAE7VUZ0  Go to UniProtKB:  A0AAE7VUZ0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-11-19 
Deposition Author(s): Hodgkinson-Bean, J.

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Funding Organization	Location	Grant Number
Ministry of Agriculture, Forestry and Fisheries (MAFF)	Japan	GD0696J004
Japan Society for the Promotion of Science (JSPS)	Japan	21K20645

Revision History  

• Version 1.0: 2025-11-19
  Type: Initial release