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 9N8X | pdb_00009n8x

Intermembrane lipid transport complex LetAB from Escherichia coli (Composite model corresponding to Map 2)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9N8X

This is version 1.3 of the entry. See complete history. 

Literature

LetA defines a structurally distinct transporter family.

Santarossa, C.C., Li, Y., Yousef, S., Hasdemir, H.S., Rodriguez, C.C., Haase, M.A.B., Baek, M., Coudray, N., Pavek, J.G., Focke, K.N., Silverberg, A.L., Bautista, C., Yeh, J.T., Marty, M.T., Baker, D., Tajkhorshid, E., Ekiert, D.C., Bhabha, G.

(2026) Nature 651: 1097-1106

  • DOI: https://doi.org/10.1038/s41586-025-09990-0
  • Primary Citation Related Structures: 
    9N8W, 9N8X

  • PubMed Abstract: 

    Membrane transport proteins translocate diverse cargos, ranging from small sugars to entire proteins, across cellular membranes 1-3 . A few structurally distinct protein families have been described that account for most of the known membrane transport processes 4-6 . However, many membrane proteins with predicted transporter functions remain uncharacterized. Here we determined the structure of Escherichia coli LetAB, a phospholipid transporter involved in outer membrane integrity, and found that LetA adopts a distinct architecture that is structurally and evolutionarily unrelated to known transporter families. LetA localizes to the inner membrane, where it is poised to load lipids into its binding partner, LetB, a mammalian cell entry (MCE) protein that forms an approximately 225 Å long tunnel for lipid transport across the cell envelope. Unexpectedly, the LetA transmembrane domains adopt a fold that is evolutionarily related to the eukaryotic tetraspanin family of membrane proteins, including transmembrane AMPA receptor regulatory proteins (TARPs) and claudins. Through a combination of deep mutational scanning, molecular dynamics simulations, AlphaFold-predicted alternative states and functional studies, we present a model for how the LetA-like family of membrane transporters facilitates the transport of lipids across the bacterial cell envelope.


  • Organizational Affiliation: 
    • Department of Biology, Johns Hopkins University, Baltimore, MD, USA.

Macromolecule Content 

  • Total Structure Weight: 621.92 kDa 
  • Atom Count: 41,543 
  • Modeled Residue Count: 5,441 
  • Deposited Residue Count: 5,707 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebS445Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebS, b1833, JW1822
UniProt
Find proteins for P0AD03 (Escherichia coli (strain K12))
Explore P0AD03 
Go to UniProtKB:  P0AD03
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AD03
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebT
B, C, D, E, F
B, C, D, E, F, G
877Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebT, b1834, JW1823
UniProt
Find proteins for P76272 (Escherichia coli (strain K12))
Explore P76272 
Go to UniProtKB:  P76272
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP76272
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM128777
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1K99GM157496-01
Other privateThe Charles H. Revson Foundation

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release
  • Version 1.1: 2026-01-21
    Changes: Data collection, Database references
  • Version 1.2: 2026-02-04
    Changes: Data collection, Database references
  • Version 1.3: 2026-04-01
    Changes: Data collection, Database references