9N8X | pdb_00009n8x

Intermembrane lipid transport complex LetAB from Escherichia coli (Composite model corresponding to Map 2)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

LetA defines a structurally distinct transporter family.

Santarossa, C.C.Li, Y.Yousef, S.Hasdemir, H.S.Rodriguez, C.C.Haase, M.A.B.Baek, M.Coudray, N.Pavek, J.G.Focke, K.N.Silverberg, A.L.Bautista, C.Yeh, J.T.Marty, M.T.Baker, D.Tajkhorshid, E.Ekiert, D.C.Bhabha, G.

(2026) Nature 

  • DOI: https://doi.org/10.1038/s41586-025-09990-0
  • Primary Citation of Related Structures:  
    9N8W, 9N8X

  • PubMed Abstract: 

    Membrane transport proteins translocate diverse cargos, ranging from small sugars to entire proteins, across cellular membranes 1-3 . A few structurally distinct protein families have been described that account for most of the known membrane transport processes 4-6 . However, many membrane proteins with predicted transporter functions remain uncharacterized. Here we determined the structure of Escherichia coli LetAB, a phospholipid transporter involved in outer membrane integrity, and found that LetA adopts a distinct architecture that is structurally and evolutionarily unrelated to known transporter families. LetA localizes to the inner membrane, where it is poised to load lipids into its binding partner, LetB, a mammalian cell entry (MCE) protein that forms an approximately 225 Å long tunnel for lipid transport across the cell envelope. Unexpectedly, the LetA transmembrane domains adopt a fold that is evolutionarily related to the eukaryotic tetraspanin family of membrane proteins, including transmembrane AMPA receptor regulatory proteins (TARPs) and claudins. Through a combination of deep mutational scanning, molecular dynamics simulations, AlphaFold-predicted alternative states and functional studies, we present a model for how the LetA-like family of membrane transporters facilitates the transport of lipids across the bacterial cell envelope.


  • Organizational Affiliation
    • Department of Biology, Johns Hopkins University, Baltimore, MD, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebS445Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebSb1833JW1822
UniProt
Find proteins for P0AD03 (Escherichia coli (strain K12))
Explore P0AD03 
Go to UniProtKB:  P0AD03
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AD03
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebT
B, C, D, E, F
B, C, D, E, F, G
877Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebTb1834JW1823
UniProt
Find proteins for P76272 (Escherichia coli (strain K12))
Explore P76272 
Go to UniProtKB:  P76272
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP76272
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM128777
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1K99GM157496-01
Other privateThe Charles H. Revson Foundation

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release
  • Version 1.1: 2026-01-21
    Changes: Data collection, Database references
  • Version 1.2: 2026-02-04
    Changes: Data collection, Database references