9N8W | pdb_00009n8w

Intermembrane lipid transport complex LetAB from Escherichia coli (Crosslinked, Composite model corresponding to Map 1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

LetA defines a structurally distinct transporter family involved in lipid trafficking.

Santarossa, C.C.Li, Y.Yousef, S.Hasdemir, H.S.Rodriguez, C.C.Haase, M.B.Baek, M.Coudray, N.Pavek, J.G.Focke, K.N.Silverberg, A.L.Bautista, C.Yeh, J.Marty, M.T.Baker, D.Tajkhorshid, E.Ekiert, D.C.Bhabha, G.

(2025) bioRxiv 

  • DOI: https://doi.org/10.1101/2025.03.21.644421
  • Primary Citation of Related Structures:  
    9N8W, 9N8X

  • PubMed Abstract: 

    Membrane transport proteins translocate diverse cargos, ranging from small sugars to entire proteins, across cellular membranes. A few structurally distinct protein families have been described that account for most of the known membrane transport processes. However, many membrane proteins with predicted transporter functions remain uncharacterized. We determined the structure of E. coli LetAB, a phospholipid transporter involved in outer membrane integrity, and found that LetA adopts a distinct architecture that is structurally and evolutionarily unrelated to known transporter families. LetA functions as a pump at one end of a ~225 Å long tunnel formed by its binding partner, MCE protein LetB, creating a pathway for lipid transport between the inner and outer membranes. Unexpectedly, the LetA transmembrane domains adopt a fold that is evolutionarily related to the eukaryotic tetraspanin family of membrane proteins, including TARPs and claudins. LetA has no detectable homology to known transport proteins, and defines a new class of membrane transporters. Through a combination of deep mutational scanning, molecular dynamics simulations, AlphaFold-predicted alternative states, and functional studies, we present a model for how the LetA-like family of membrane transporters may use energy from the proton-motive force to drive the transport of lipids across the bacterial cell envelope.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebS445Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebSb1833JW1822
UniProt
Find proteins for P0AD03 (Escherichia coli (strain K12))
Explore P0AD03 
Go to UniProtKB:  P0AD03
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AD03
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intermembrane transport protein YebT
B, C, D, E, F
B, C, D, E, F, G
877Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: yebTb1834JW1823
UniProt
Find proteins for P76272 (Escherichia coli (strain K12))
Explore P76272 
Go to UniProtKB:  P76272
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP76272
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM128777
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1K99GM157496-01
Other privateThe Charles H. Revson Foundation

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release