9MVU | pdb_00009mvu

C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Identification and engineering of potent bispecific antibodies that protect against herpes simplex virus recurrent disease.

Lee, C.V.Viadiu, H.Kalamkar, A.Bernstein, D.I.Pae, A.Yu, X.Wong, S.Bravo, F.J.Ding, S.Seto, E.Hung, M.Yu, Y.Xing, W.Papalia, G.A.Kan, W.Carr, B.Thomas, M.Tong, L.Desai, P.Jarrousse, N.Mercier, A.Holdorf, M.M.Fletcher, S.P.Abernathy, E.

(2025) Cell Rep 44: 116063-116063

  • DOI: https://doi.org/10.1016/j.celrep.2025.116063
  • Primary Citation of Related Structures:  
    9MVU, 9MW5, 9MY8

  • PubMed Abstract: 

    Herpes simplex virus (HSV) causes lifelong infections, including oral and genital herpes. There is no vaccine, and current antivirals are only partially effective at reducing symptoms and transmission. Therapeutic antibodies offer a potentially long-acting treatment option, although efforts to pursue this have been limited. We performed an alpaca immunization campaign and discovered high-affinity antibodies that both neutralized and completely blocked cell-to-cell spread (CCS), a key mechanism by which HSV evades neutralizing antibodies. Unexpectedly, we found that engineering antibodies into a bispecific format targeting two viral glycoproteins dramatically increased antiviral potency. Solving the structures of three antibodies using cryo-electron microscopy (cryo-EM) revealed a mechanistic understanding of how the bispecific format could enhance potency. Lastly, these bispecific antibodies significantly reduced lesion development in the guinea pig model of genital herpes, demonstrating that delayed dosing after latency establishment can reduce disease and confirming their potential as a transformative treatment option.


  • Organizational Affiliation
    • Gilead Sciences, Inc., Foster City, CA, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein B
A, B, C
727Human alphaherpesvirus 1 strain 17Mutation(s): 1 
Gene Names: gBUL27
UniProt
Find proteins for P08666 (Human herpesvirus 2 (strain HG52))
Explore P08666 
Go to UniProtKB:  P08666
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08666
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C6 Neutralizing Nanobody
D, E, F
131Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-13
    Type: Initial release