9MTJ | pdb_00009mtj

Structure of porcine Fab 15-5 in complex with influenza H1N1 A/Solomon Island/3/2006 hemagglutinin

• PDB DOI: https://doi.org/10.2210/pdb9MTJ/pdb
• EM Map EMD-48611: EMDB EMDataResource

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Influenza A virus (A/Solomon Islands/3/2006(H1N1)), Sus scrofa
• Expression System: Spodoptera frugiperda, Homo sapiens
• Mutation(s): No 


• Deposited: 2025-01-11 Released: 2025-09-24 
• Deposition Author(s): Lv, H., Pholcharee, T., Wu, N.C.
• Funding Organization(s): Howard Hughes Medical Institute (HHMI)

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.65 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural analysis of broadly neutralizing porcine antibodies to influenza hemagglutinin stem

Lv, H., Pholcharee, T., Wu, N.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 12-mer - A3B3C3D3 Pseudo Symmetry: Cyclic - C3  (Explore in 3D)
Pseudo Stoichiometry: Hetero 12-mer - A6B3C3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 259.46 kDa 
• Atom Count: 16,805 
• Modeled Residue Count: 2,167 
• Deposited Residue Count: 2,349 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin (HA1 polypeptide) from influenza H1N1 A/Solomon Island/3/2006	A, C, E	326	Influenza A virus (A/Solomon Islands/3/2006(H1N1))	Mutation(s): 0  Gene Names: HA
UniProt
Find proteins for A0A0G2RTI0 (Influenza A virus) Explore A0A0G2RTI0  Go to UniProtKB:  A0A0G2RTI0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin (HA2 polypeptide) from influenza H1N1 A/Solomon Island/3/2006	B, D, F	222	Influenza A virus (A/Solomon Islands/3/2006(H1N1))	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of Fab from porcine antibody 15-5	G [auth H], H [auth I], K [auth M]	125	Sus scrofa	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of Fab from porcine antibody 15-5	I [auth J], J [auth L], L [auth N]	110	Sus scrofa	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.65 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	cryoSPARC	4.5

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-09-24 
Deposition Author(s): Lv, H., Pholcharee, T., Wu, N.C.

---

Funding Organization	Location	Grant Number
Howard Hughes Medical Institute (HHMI)	United States	Emerging Pathogens Initiative

Revision History  

• Version 1.0: 2025-09-24
  Type: Initial release