9MFW | pdb_00009mfw

Motor domain with ADP AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition

• PDB DOI: https://doi.org/10.2210/pdb9MFW/pdb
• EM Map EMD-48240: EMDB EMDataResource

• Classification: MOTOR PROTEIN
• Organism(s): Saccharomyces cerevisiae
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2024-12-10 Released: 2025-12-17 
• Deposition Author(s): Geohring, I.C., Chai, P., Iyer, B.R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

A nucleotide code governs Lis1's ability to relieve dynein autoinhibition

Geohring, I.C., Chai, P., Iyer, B.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 473.71 kDa 
• Atom Count: 21,037 
• Modeled Residue Count: 2,583 
• Deposited Residue Count: 4,092 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynein heavy chain, cytoplasmic	A	4,092	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: DYN1, DHC1, YKR054C
UniProt
Find proteins for P36022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36022  Go to UniProtKB:  P36022

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ATP (Subject of Investigation/LOI)	C [auth A]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N
ADP (Subject of Investigation/LOI)	B [auth A], D [auth A], E [auth A]	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-12-17 
Deposition Author(s): Geohring, I.C., Chai, P., Iyer, B.R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35 GM139483
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35 GM142959

Revision History  

• Version 1.0: 2025-12-17
  Type: Initial release