9MBB | pdb_00009mbb

Cryo-EM structure of antagonist-bound GPCR


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural characterization of five functional states of metabotropic glutamate receptor 8.

Zhao, J.Deng, Y.Xu, Z.Xu, C.Zhao, C.Li, Z.Sun, H.Tian, X.Song, Y.Cimadevila, M.Wang, H.Liu, Y.Zhang, X.Chen, Y.Sun, S.Yong, X.Su, L.He, Y.Zhong, Y.Yang, H.Pin, J.P.Yan, W.Shao, Z.Liu, J.

(2025) Mol Cell 85: 3460-3473.e6

  • DOI: https://doi.org/10.1016/j.molcel.2025.08.019
  • Primary Citation of Related Structures:  
    9MB9, 9MBA, 9MBB, 9MBC, 9MBD

  • PubMed Abstract: 

    Metabotropic glutamate receptors (mGluRs) are dimeric class C G protein-coupled receptors, which play crucial roles in brain physiology and pathology. Among them, mGlu8 is the least characterized, though it is physiologically important. While recognized to signal via G i/o proteins, the involvement of β-arrestin is unknown. Here, we found that both mGlu8 agonists and positive allosteric modulators (PAMs) activate G i signaling, but mainly agonists induce β-arrestin recruitment. We solved five human mGlu8 cryo-electron microscopy (cryo-EM) structures in various states: apo, antagonist-bound, agonist + PAM-bound, agonist + PAM-bound with G i protein, and agonist-bound with β-arrestin1 states. They revealed a unique PAM-binding pocket at the extracellular side of the TM6/TM7 interface. Agonist and PAM promote active mGlu8 association with one G i protein asymmetrically (2:1), while two β-arrestin1 can interact symmetrically (2:2) to both subunits of an inactive dimer state to promote constitutive internalization. These findings elucidate how mGlu8 selectively engages transducers, offering insights into its signaling capabilities and selective drug development.


  • Organizational Affiliation
    • Division of Nephrology and Kidney Research Institute, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China; Tianfu Jincheng Laboratory, Chengdu 610212, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Metabotropic glutamate receptor 8
A, B
908Homo sapiensMutation(s): 0 
Gene Names: GRM8GPRC1HMGLUR8
UniProt & NIH Common Fund Data Resources
Find proteins for O00222 (Homo sapiens)
Explore O00222 
Go to UniProtKB:  O00222
PHAROS:  O00222
GTEx:  ENSG00000179603 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO00222
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONCoot

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-01
    Type: Initial release