9M66 | pdb_00009m66

Cryo-EM structure of bacteriophage NF5 capsid

PDB DOI: https://doi.org/10.2210/pdb9M66/pdb
EM Map EMD-63659: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Brochothrix phage NF5
Mutation(s): No

Deposited: 2025-03-07 Released: 2025-12-17
Deposition Author(s): Peng, Y.N., Liu, H.R.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9M66

This is version 1.0 of the entry. See complete history.

Literature

Structure of a Brochothrix thermosphacta becteriophage reveals the gram-positive infected siphophage cell wall adsorption

Peng, Y.N., Liu, H.R.

To be published.

Macromolecule Content

Total Structure Weight: 202.33 kDa
Atom Count: 14,098
Modeled Residue Count: 1,876
Deposited Residue Count: 1,890
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp6	A, B, C, D, E A, B, C, D, E, F, G	270	Brochothrix phage NF5	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-17

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	12034006
National Natural Science Foundation of China (NSFC)	China	32430020
National Natural Science Foundation of China (NSFC)	China	32071209

Revision History (Full details and data files)

Version 1.0: 2025-12-17
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.