9JSD | pdb_00009jsd

Cryo-EM structure of Snf7 linker extension

PDB DOI: https://doi.org/10.2210/pdb9JSD/pdb
EM Map EMD-61770: EMDB EMDataResource

Classification: PROTEIN TRANSPORT
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-30 Released: 2025-10-08
Deposition Author(s): Shen, Q.T., Liu, M.D.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9JSD

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of Snf7 linker extension

Shen, Q.T., Liu, M.D.

To be published.

Macromolecule Content

Total Structure Weight: 27.88 kDa
Atom Count: 1,046
Modeled Residue Count: 132
Deposited Residue Count: 255
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vacuolar-sorting protein SNF7	A	255	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: SNF7, DID1, VPS32, YLR025W
UniProt
Find proteins for P39929 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39929 Go to UniProtKB: P39929
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39929
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 7.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-10-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-10-08
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.