9JL0 | pdb_00009jl0

Crystal structure of feline CD8aa homodimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 
    0.250 (Depositor), 0.251 (DCC) 
  • R-Value Work: 
    0.205 (Depositor), 0.212 (DCC) 
  • R-Value Observed: 
    0.209 (Depositor) 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history


Literature

Insights into the structural features of a feline CD8 alpha alpha homodimer.

Liang, R.Y.Cao, Y.D.Gao, Y.Y.Li, H.Y.Sang, C.J.Xiu, Y.H.Li, D.Liu, D.Z.Gao, F.S.Li, Z.B.

(2025) Dev Comp Immunol 169: 105405-105405

  • DOI: https://doi.org/10.1016/j.dci.2025.105405
  • Primary Citation of Related Structures:  
    9JL0

  • PubMed Abstract: 

    Cat ownership enjoys widespread popularity across the globe, with over 50% of households in certain countries owning feline companions. Besides providing outstanding emotional support for human, cats occupy a distinctive niche in scientific research, with their unique biological attributes and disease susceptibilities establishing them as a preferred model species across multiple disciplines. However, structural features and biological role of feline immune-related molecules remain largely unknown. In the current study, we crystallize feline CD8αα (fCD8αα) ectodomain and analyze its structural features. The fCD8αα ectodomain acts up to canonical fold of CD8αα homodimer immunoglobulin variable (Ig-V) and has a common feature of CD8α also is symbolic α-helix located on E-F loop. In line with the known CD8αα, the homodimer formation of fCD8αα relies upon the conserved hydrophobic core and conserved and species-specific residues provide additional hydrogen bonds. Compared with the other known CD8α monomers, the structural differences of fCD8α monomer focus on the loop regions linking different strands, which also show low sequence similarity in sequence alignment results. Further, we generate an fCD8αα/FLA-E*01801 model with high pLDDT and ipTM scores using AlphaFold3. Regardless of the spatial conformations of conserved or similar residues and possible interactions, the binding manner between fCD8αα and FLA-E*01801 complex closely resembles that of the known hCD8αα/HLA-A2 complex. Overall, our results provide structural and immunological knowledge for studying CD8αα function in the feline model and reveal the potential immunomodulatory roles of feline CD8 and its binding partners, deepening our understanding of the structural and functional mechanisms underlying feline immune responses.


  • Organizational Affiliation
    • Key Laboratory of Animal Biosafety Risk Prevention and Control (North) and Key Laboratory of Veterinary Biological Products and Chemical Drugs of Ministry of Agriculture and Rural Affairs (MARA), Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD8 alpha chain
A, B
123Felis catusMutation(s): 0 
Gene Names: CD8A
UniProt
Find proteins for P41688 (Felis catus)
Explore P41688 
Go to UniProtKB:  P41688
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41688
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free:  0.250 (Depositor), 0.251 (DCC) 
  • R-Value Work:  0.205 (Depositor), 0.212 (DCC) 
  • R-Value Observed: 0.209 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 132.75α = 90
b = 132.75β = 90
c = 44.66γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China3210210192

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-02
    Type: Initial release
  • Version 1.1: 2025-07-09
    Changes: Database references
  • Version 1.2: 2025-07-30
    Changes: Database references