9J18 | pdb_00009j18

Structure of the wild-type AZG2 in Arabidopsis thaliana in the trans-Zeatin-bound state-2 at pH 7.4

PDB DOI: https://doi.org/10.2210/pdb9J18/pdb
EM Map EMD-61071: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2024-08-03 Released: 2025-03-19
Deposition Author(s): Sun, L., Liu, X., Wei, H., Yang, Z., Ying, W.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of the wild-type AZG2 in Arabidopsis thaliana in the trans-Zeatin-bound state-2 at pH 7.4

Sun, L., Liu, X., Wei, H., Yang, Z., Ying, W.

To be published.

Macromolecule Content

Total Structure Weight: 113.08 kDa
Atom Count: 6,944
Modeled Residue Count: 930
Deposited Residue Count: 1,060
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenine/guanine permease AZG2	A, B	530	Arabidopsis thaliana	Mutation(s): 0 Gene Names: AZG2, At5g50300, K6A12.16 Membrane Entity: Yes
UniProt
Find proteins for Q84MA8 (Arabidopsis thaliana) Explore Q84MA8 Go to UniProtKB: Q84MA8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q84MA8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZEA (Subject of Investigation/LOI) Query on ZEA Download Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B]	(2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol C₁₀ H₁₃ N₅ O UZKQTCBAMSWPJD-FARCUNLSSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-19

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	32322041, 32321001, 31900885

Revision History (Full details and data files)

Version 1.0: 2025-03-19
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.