9IQ8 | pdb_00009iq8

Ankyrin-like protein, AnkB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 
    0.283 (Depositor), 0.283 (DCC) 
  • R-Value Work: 
    0.247 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 
    0.248 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural analysis of a bacterial ankyrin-like protein secreted by Acinetobacter baumannii.

Sung, J.H.Lee, S.Y.Lee, C.S.Lee, J.H.Park, H.H.

(2024) Biochem Biophys Res Commun 733: 150573-150573

  • DOI: https://doi.org/10.1016/j.bbrc.2024.150573
  • Primary Citation of Related Structures:  
    9IQ8

  • PubMed Abstract: 

    In bacteria, the ankyrin-like protein AnkB helps overcome stress by regulating catalase activity when expressed under stressful conditions. As the structural properties of AnkB are largely unexplored, our understanding of various AnkB-mediated functions in bacteria remains limited. In the present study, we describe the structure of AnkB from Acinetobacter baumannii, hereafter referred to as "AbAnkB," which has a unique tertiary configuration compared with that of other ankyrin domain-containing proteins. Structural analysis revealed that AbAnkB has a relatively long loop between AKR3 and AKR4 and an oppositely positioned α 8 helix. Based on amino acid conservation and protein surface analyses, we identified a hydrophobic patch that might be critical for the function of AbAnkB. To the best of our knowledge, our study is the first to report the structure of a bacterial AnkB protein; our findings will markedly enhance our understanding of its functions in bacteria.


  • Organizational Affiliation
    • College of Pharmacy, Chung-Ang University, Seoul, 06974, Republic of Korea; Department of Global Innovative Drugs, Graduate School of Chung-Ang University, Seoul, 06974, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ankyrin-like protein AnkB
A, B, C, D
161Acinetobacter baumanniiMutation(s): 0 
Gene Names: CBE85_13960
UniProt
Find proteins for A0A7U3Y3F2 (Acinetobacter baumannii (strain ACICU))
Explore A0A7U3Y3F2 
Go to UniProtKB:  A0A7U3Y3F2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7U3Y3F2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free:  0.283 (Depositor), 0.283 (DCC) 
  • R-Value Work:  0.247 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 0.248 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.08α = 90
b = 90.22β = 116.38
c = 78.99γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release