9IL4 | pdb_00009il4

Structure and iron-transporting mechanism of BOCT1

PDB DOI: https://doi.org/10.2210/pdb9IL4/pdb
EM Map EMD-60664: EMDB EMDataResource

Classification: PROTEIN TRANSPORT
Organism(s): Mus spicilegus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-06-29 Released: 2025-07-02
Deposition Author(s): Chen, J., Chen, L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9IL4

This is version 1.1 of the entry. See complete history.

Literature

Structure and iron-transporting mechanism of BOCT1

Chen, J., Chen, L.

To be published.

Macromolecule Content

Total Structure Weight: 111.55 kDa
Atom Count: 4,922
Modeled Residue Count: 666
Deposited Residue Count: 1,040
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Solute carrier family 22 (organic cation transporter), member 17	A [auth B], B [auth A]	520	Mus spicilegus	Mutation(s): 0
UniProt
Find proteins for A0A8C6HEW4 (Mus spicilegus) Explore A0A8C6HEW4 Go to UniProtKB: A0A8C6HEW4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A8C6HEW4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE2 (Subject of Investigation/LOI) Query on FE2 Download:Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth A] MOL2 format, chain C [auth B] MOL2 format, chain D [auth A] mmCIF format, chain C [auth B] mmCIF format, chain D [auth A]	C [auth B], D [auth A]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Focus chain D [auth A] Interactions & Density Focus chain C [auth B] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	V4
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-07-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32130048 and 92157301

Revision History (Full details and data files)

Version 1.0: 2025-07-02
Type: Initial release
Version 1.1: 2025-07-23
Changes: Data collection

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.