9I8E | pdb_00009i8e

Structure of Encapsulin from Dendrosporobacter quercicolus

PDB DOI: https://doi.org/10.2210/pdb9I8E/pdb
EM Map EMD-52715: EMDB EMDataResource

Classification: CYTOSOLIC PROTEIN
Organism(s): Dendrosporobacter quercicolus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-02-04 Released: 2025-05-21
Deposition Author(s): Belyy, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Encapsulin from Arthrobacter sp.

Pecanac, O., Belyy, A., Martin, C., Kleissen, R., Fraaije, M., Loncar, N.

(2025) Mater Adv

DOI: https://doi.org/10.1039/D5MA00268K

Macromolecule Content

Total Structure Weight: 120.12 kDa
Atom Count: 8,436
Modeled Residue Count: 1,112
Deposited Residue Count: 1,112
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Encapsulin	A [auth C], B [auth D], C [auth B], D [auth A]	278	Dendrosporobacter quercicolus	Mutation(s): 0 Gene Names: SAMN04488502_10872
UniProt
Find proteins for A0A1G9WS71 (Dendrosporobacter quercicolus) Explore A0A1G9WS71 Go to UniProtKB: A0A1G9WS71
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1G9WS71
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.1_5286

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-05-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-05-21
Type: Initial release
Version 1.1: 2025-12-03
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.