9I3O | pdb_00009i3o

Csu pilus rod type 2 stack


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Antiparallel stacking of Csu pili drives Acinetobacter baumannii 3D biofilm assembly.

Malmi, H.Pakharukova, N.Paul, B.Tuittila, M.Ahmad, I.Knight, S.D.Uhlin, B.E.Ghosal, D.Zavialov, A.V.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-68860-z
  • Primary Citation of Related Structures:  
    9I37, 9I3M, 9I3N, 9I3O

  • PubMed Abstract: 

    Many Gram-negative nosocomial pathogens rely on adhesive filaments, known as archaic chaperone-usher pili, to establish stress- and drug-resistant, multi-layered biofilms. Here, we uncover the mechanism by which these pili build three-dimensional (3D) biofilm architectures. In situ analyses of Acinetobacter baumannii biofilms using electron microscopy (EM) reveal an extensive network of ultrathin, flat stacks of archaic Csu pili interconnecting bacterial cells in 3D space. Cryo-EM structures of a single native pilus, pilus pairs, and two types of multi-pilus stacks show that the pili pack into antiparallel sheets, with their rods connected laterally by junctions at their zigzag corners. This antiparallel arrangement ensures that contacts form primarily between pili from interacting cells rather than pili from the same cell. With a remarkably short helical repeat, archaic chaperone-usher pili spontaneously establish a high density of junctions that determines the biofilm's 3D architecture. Our findings may help develop new therapies against multidrug-resistant bacterial infections by targeting pilus-pilus interactions.


  • Organizational Affiliation
    • Joint Biotechnology Laboratory, MediCity, Faculty of Medicine, University of Turku; Tykistökatu 6A, Turku, Finland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CsuA/B155Acinetobacter baumanniiMutation(s): 0 
Gene Names: ATCC19606_12570
UniProt
Find proteins for A0A6F8TDQ5 (Acinetobacter baumannii)
Explore A0A6F8TDQ5 
Go to UniProtKB:  A0A6F8TDQ5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6F8TDQ5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARCv4.5.3

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland321762
Academy of FinlandFinland360760
Sigrid Juselius FoundationFinland2023

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release
  • Version 1.1: 2026-02-18
    Changes: Data collection, Database references