9I1U | pdb_00009i1u

Lytic polysaccharide monooxygenase from Cellvibrio japonicus - CjAA10B

PDB DOI: https://doi.org/10.2210/pdb9I1U/pdb

Classification: OXIDOREDUCTASE
Organism(s): Cellvibrio japonicus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-01-17 Released: 2025-12-24
Deposition Author(s): Branch, J., Hemsworth, G.R.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.276 (Depositor), 0.273 (DCC)
R-Value Work:
0.230 (Depositor), 0.226 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Electrochemical Insight into the Copper Redox Chemistry and H2O2 and O2 Reducing Capability of two AA10 Lytic Polysaccharide Monooxygenases

Reid, E.K., Miles, C.G., Lloyd Laney, H.O., Nairn, A., Branch, J., Yates, N.D.J., Ascham, A.E., Walton, P.H., Davies, G.J., Charnock, S., Hemsworth, G.R., Parkin, A.

To be published.

Macromolecule Content

Total Structure Weight: 192.8 kDa
Atom Count: 13,998
Modeled Residue Count: 1,650
Deposited Residue Count: 1,688
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chitin binding protein, putative, cbp33/10B	A, B, C, D, E A, B, C, D, E, F, G, H	211	Cellvibrio japonicus	Mutation(s): 0 Gene Names: 10B, cbp33, CJA_3139
UniProt
Find proteins for B3PDT6 (Cellvibrio japonicus (strain Ueda107)) Explore B3PDT6 Go to UniProtKB: B3PDT6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B3PDT6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain L [auth B] SDF format, chain P [auth D] SDF format, chain Q [auth D] SDF format, chain U [auth F] SDF format, chain W [auth G] SDF format, chain Y [auth H] SDF format, chain S [auth E] SDF format, chain N [auth C] MOL2 format, chain J [auth A] MOL2 format, chain L [auth B] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain U [auth F] MOL2 format, chain W [auth G] MOL2 format, chain Y [auth H] MOL2 format, chain S [auth E] MOL2 format, chain N [auth C] mmCIF format, chain J [auth A] mmCIF format, chain L [auth B] mmCIF format, chain P [auth D] mmCIF format, chain Q [auth D] mmCIF format, chain U [auth F] mmCIF format, chain W [auth G] mmCIF format, chain Y [auth H] mmCIF format, chain S [auth E] mmCIF format, chain N [auth C]	J [auth A] L [auth B] N [auth C] P [auth D] Q [auth D] J [auth A], L [auth B], N [auth C], P [auth D], Q [auth D], S [auth E], U [auth F], W [auth G], Y [auth H]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain S [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Y [auth H] Interactions & Density Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain S [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Y [auth H]
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain O [auth D] SDF format, chain R [auth E] SDF format, chain T [auth F] SDF format, chain X [auth H] SDF format, chain V [auth G] SDF format, chain M [auth C] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain O [auth D] MOL2 format, chain R [auth E] MOL2 format, chain T [auth F] MOL2 format, chain X [auth H] MOL2 format, chain V [auth G] MOL2 format, chain M [auth C] mmCIF format, chain I [auth A] mmCIF format, chain K [auth B] mmCIF format, chain O [auth D] mmCIF format, chain R [auth E] mmCIF format, chain T [auth F] mmCIF format, chain X [auth H] mmCIF format, chain V [auth G] mmCIF format, chain M [auth C]	I [auth A] K [auth B] M [auth C] O [auth D] R [auth E] I [auth A], K [auth B], M [auth C], O [auth D], R [auth E], T [auth F], V [auth G], X [auth H]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain O [auth D] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain X [auth H] Interactions & Density Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain O [auth D] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain X [auth H]