9I1M | pdb_00009i1m

Structure of AauA, a sugar-binding protein with its substrate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 
    0.143 (Depositor), 0.139 (DCC) 
  • R-Value Work: 
    0.126 (Depositor), 0.137 (DCC) 
  • R-Value Observed: 
    0.127 (Depositor) 

Starting Model: in silico
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This is version 1.1 of the entry. See complete history


Literature

Convergent evolution of distinct D-ribulose utilisation pathways in attaching and effacing pathogens.

Cottam, C.Bowran, K.White, R.T.Basle, A.Josts, I.Connolly, J.P.R.

(2025) Nat Commun 16: 6976-6976

  • DOI: https://doi.org/10.1038/s41467-025-62476-5
  • Primary Citation of Related Structures:  
    9I1M

  • PubMed Abstract: 

    Attaching and effacing pathogens overcome colonisation resistance by competing with metabolically similar organisms for limited resources. Enterohaemorrhagic E. coli (EHEC) utilises the pathogenicity island-encoded Accessory ʟ-arabinose Uptake (Aau) transporter to effectively colonise the mouse gut, hypothesised to be achieved via an enhanced capacity to scavenge ʟ-arabinose. Aau is regulated exclusively in response to ʟ-arabinose, but it is unclear how this system specifically benefits EHEC in vivo. Here, we show that Aau displays a > 200-fold higher affinity for the monosaccharide D-ribulose, over ʟ-arabinose. EHEC cannot grow on D-ribulose as a sole carbon source and this sugar does not trigger aau transcription. However, Aau effectively transports D-ribulose into the cell only in the presence of ʟ-arabinose, where it feeds into the pentose phosphate pathway, after phosphorylation by the ʟ-ribulokinase AraB, thus providing EHEC a significant fitness advantage. EHEC has therefore evolved a mechanism of hijacking the canonical ʟ-arabinose utilisation machinery to promote D-ribulose utilisation in vivo. Furthermore, Citrobacter rodentium encodes an analogous system that exclusively transports D-ribulose and metabolises it via a dedicated D-ribulokinase. These unique mechanisms of D-ribulose utilisation suggest that convergent evolution has driven the ability of distinct pathogenic species to exploit this nutrient during invasion of the gut niche.


  • Organizational Affiliation
    • Newcastle University Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sugar-binding protein328Escherichia coliMutation(s): 0 
Gene Names: ECs_0374
UniProt
Find proteins for Q8X6A6 (Escherichia coli O157:H7)
Explore Q8X6A6 
Go to UniProtKB:  Q8X6A6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8X6A6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free:  0.143 (Depositor), 0.139 (DCC) 
  • R-Value Work:  0.126 (Depositor), 0.137 (DCC) 
  • R-Value Observed: 0.127 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.38α = 90
b = 66.94β = 94.45
c = 57.85γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
UK Research and Innovation (UKRI)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2026-01-28
    Changes: Database references