9HPZ | pdb_00009hpz

Cryo-EM structure of the wild-type flagellar filament from Roseburia hominis

PDB DOI: https://doi.org/10.2210/pdb9HPZ/pdb
EM Map EMD-52337: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Roseburia hominis A2-183
Mutation(s): No

Deposited: 2024-12-16 Released: 2025-12-10
Deposition Author(s): Bell, M.E.W., Koch, I., Hipp, K., Hartmann, M.D., Merino, F., Ley, R.E.
Funding Organization(s): Max Planck Society

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of the wild-type flagellar filament from Roseburia hominis

Bell, M.E.W., Ley, R.E.

To be published.

Macromolecule Content

Total Structure Weight: 629.66 kDa
Atom Count: 43,846
Modeled Residue Count: 5,940
Deposited Residue Count: 5,940
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellin	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	270	Roseburia hominis A2-183	Mutation(s): 0
UniProt
Find proteins for G2SZK6 (Roseburia hominis (strain DSM 16839 / JCM 17582 / NCIMB 14029 / A2-183)) Explore G2SZK6 Go to UniProtKB: G2SZK6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G2SZK6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	ISOLDE	1.6
RECONSTRUCTION	RELION	4.0

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-12-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Max Planck Society	Germany	--

Revision History (Full details and data files)

Version 1.0: 2025-12-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.