9HN7 | pdb_00009hn7

Mouse QTRT1/2 in complex with mouse tRNA-Tyr


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Queuosine is incorporated into precursor tRNA before splicing.

Guo, W.Kaczmarczyk, I.Kopietz, K.Flegler, F.Russo, S.Cigirgan, E.Chramiec-Glabik, A.Koziej, L.Cirzi, C.Peschek, J.Reuter, K.Helm, M.Glatt, S.Tuorto, F.

(2025) Nat Commun 16: 7044-7044

  • DOI: https://doi.org/10.1038/s41467-025-62220-z
  • Primary Citation of Related Structures:  
    9HN7, 9HN9

  • PubMed Abstract: 

    Each newly transcribed tRNA molecule must undergo processing and receive modifications to become functional. Queuosine (Q) is a tRNA modification present at position 34 of four tRNAs with "GUN" anticodons. Among these, the precursor of tRNA Tyr carries an intronic sequence within the anticodon loop that is removed by an essential non-canonical splicing event. The functional and temporal coupling between tRNA-splicing and Q-incorporation remains elusive. Here, we demonstrate in vitro and in vivo that intron-containing precursors of tRNA Tyr are modified with Q or with the Q-derivative galactosyl-queuosine (galQ) before being spliced. We show that this order of events is conserved in mouse, human, flies and worms. Using single particle cryo-EM, we confirm that pre-tRNA Tyr is a bona fide substrate of the QTRT1/2 complex, which catalyzes the incorporation of Q into the tRNA. Our results elucidate the hierarchical interplay that coordinates Q-incorporation and splicing in eukaryotic tRNAs, providing a relevant but unappreciated aspect of the cellular tRNA maturation process.


  • Organizational Affiliation
    • Faculty of Biosciences, Heidelberg University, Heidelberg, Germany.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Queuine tRNA-ribosyltransferase catalytic subunit 1395Mus musculusMutation(s): 0 
Gene Names: Qtrt1TgtTgut
EC: 2.4.2.29 (PDB Primary Data), 2.4.2.64 (UniProt)
UniProt
Find proteins for Q9JMA2 (Mus musculus)
Explore Q9JMA2 
Go to UniProtKB:  Q9JMA2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JMA2
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Queuine tRNA-ribosyltransferase accessory subunit 2416Mus musculusMutation(s): 0 
Gene Names: Qtrt2Qtrtd1
UniProt
Find proteins for B8ZXI1 (Mus musculus)
Explore B8ZXI1 
Go to UniProtKB:  B8ZXI1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB8ZXI1
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains LengthOrganismImage
mouse tRNA-Tyr78Mus musculus
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0-beta
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101001394

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-13
    Type: Initial release