9HK0 | pdb_00009hk0

PNT domain of human ETV7

• PDB DOI: https://doi.org/10.2210/pdb9HK0/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2024-12-02 Released: 2024-12-11 
• Deposition Author(s): Valer, L., Binacchi, R., Ciribilli, Y., Biasini, E., Inga, A., Lolli, G.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free: 
  0.205 (Depositor), 0.207 (DCC) 
• R-Value Work: 
  0.184 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.185 (Depositor) 

Starting Model: in silico

Literature

PNT domain of human ETV7

Binacchi, R., Valer, L., Ciribilli, Y., Biasini, E., Inga, A., Lolli, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 8.99 kDa 
• Atom Count: 704 
• Modeled Residue Count: 76 
• Deposited Residue Count: 76 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor ETV7	A	76	Homo sapiens	Mutation(s): 1  Gene Names: ETV7, TEL2, TELB, TREF
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y603 (Homo sapiens) Explore Q9Y603  Go to UniProtKB:  Q9Y603
PHAROS:  Q9Y603 GTEx:  ENSG00000010030

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free:  0.205 (Depositor), 0.207 (DCC) 
• R-Value Work:  0.184 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.185 (Depositor) 

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.813	α = 90
b = 67.813	β = 90
c = 29.831	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-11 
Deposition Author(s): Valer, L., Binacchi, R., Ciribilli, Y., Biasini, E., Inga, A., Lolli, G.

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Funding Organization	Location	Grant Number
Other government	Italy	NextGeneration EU PNRR iNEST

Revision History  

• Version 1.0: 2024-12-11
  Type: Initial release