9HJI | pdb_00009hji

Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.0 of the entry. See complete history


Literature

Cryo-EM led analysis of open and closed conformations of Chagas vaccine candidate TcPOP.

Batra, S.Olmo, F.Ragan, T.J.Kaplan, M.Calvaresi, V.Frank, A.M.Lancey, C.Assadipapari, M.Ying, C.Struwe, W.B.Hesketh, E.L.Kelly, J.M.Barfod, L.Campeotto, I.

(2025) Nat Commun 16: 7164-7164

  • DOI: https://doi.org/10.1038/s41467-025-62068-3
  • Primary Citation of Related Structures:  
    9HJI, 9HJJ

  • PubMed Abstract: 

    Chagas disease, caused by the protozoan parasite Trypanosoma cruzi, remains a significant global public health concern. Despite its profound health impact in both endemic and non-endemic areas, no vaccine is available, and the existing therapies are outdated, producing severe side effects. The 80 kDa prolyl oligopeptidase of Trypanosoma cruzi (TcPOP) has been identified as a leading candidate for Chagas vaccine development. Here we report the three-dimensional structure of TcPOP in open and closed conformation, at a global resolution of 3.8 and 3.6 Å, respectively, determined using single-particle cryo-electron microscopy. Multiple conformations were observed and further characterized using plasmonic optical tweezers and hydrogen-deuterium exchange mass spectrometry. To assess the immunogenic potential of TcPOP, we immunized female mice and evaluated both polyclonal and monoclonal responses against the TcPOP antigen and its homologues. The anti-TcPOP polyclonal response demonstrates invasion blocking properties via parasite lysis. Polyclonal sera  were cross-reactive with closely-related POPs but not with human homologues. Collectively, our findings provide structural and functional insights necessary to understand the immunogenicity of TcPOP for future Chagas vaccine development.


  • Organizational Affiliation
    • School of Biosciences, Division of Microbiology, Brewing and Biotechnology, University of Nottingham, Sutton Bonington Campus, Loughborough, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prolyl endopeptidase714Trypanosoma cruziMutation(s): 0 
Gene Names: TCPO
EC: 3.4.21
UniProt
Find proteins for Q71MD6 (Trypanosoma cruzi)
Explore Q71MD6 
Go to UniProtKB:  Q71MD6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ71MD6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom204801/Z/16/Z
Royal SocietyUnited KingdomIESR2232167

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-01
    Type: Initial release