9HH0 | pdb_00009hh0

Crystal structure of recombinant soman-aged swine butyrylcholinesterase

PDB DOI: https://doi.org/10.2210/pdb9HH0/pdb

Classification: HYDROLASE
Organism(s): Sus scrofa
Expression System: Drosophila melanogaster
Mutation(s): No

Deposited: 2024-11-20 Released: 2025-12-03
Deposition Author(s): Brazzolotto, X., Nachon, F.
Funding Organization(s): French Ministry of Armed Forces

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.66 Å
R-Value Free:
0.236 (Depositor), 0.235 (DCC)
R-Value Work:
0.195 (Depositor), 0.196 (DCC)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of recombinant soman-aged swine butyrylcholinesterase

Brazzolotto, X., Nachon, F.

To be published.

Macromolecule Content

Total Structure Weight: 246.88 kDa
Atom Count: 17,379
Modeled Residue Count: 2,074
Deposited Residue Count: 2,116
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carboxylic ester hydrolase	A, B, C, D	529	Sus scrofa	Mutation(s): 0 Gene Names: BCHE EC: 3.1.1
UniProt
Find proteins for A0A4X1VEU5 (Sus scrofa) Explore A0A4X1VEU5 Go to UniProtKB: A0A4X1VEU5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A4X1VEU5
Glycosylation
Glycosylation Sites: 5	Glycosylation Focus chain A Focus chain B Focus chain C Focus chain D
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, G	2		N-Glycosylation	Interactions Focus chain E Focus chain G Interactions & Density Focus chain E Focus chain G
Glycosylation Resources
GlyTouCan: G86851RC GlyCosmos: G86851RC GlyGen: G86851RC

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	F	5		N-Glycosylation	Interactions Focus chain F Interactions & Density Focus chain F
Glycosylation Resources
GlyTouCan: G42466VF GlyCosmos: G42466VF GlyGen: G42466VF

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	H, I, L	2		N-Glycosylation	Interactions Focus chain H Focus chain I Focus chain L Interactions & Density Focus chain H Focus chain I Focus chain L
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	J	4		N-Glycosylation	Interactions Focus chain J Interactions & Density Focus chain J
Glycosylation Resources
GlyTouCan: G32152BH GlyCosmos: G32152BH GlyGen: G32152BH

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	K	3		N-Glycosylation	Interactions Focus chain K Interactions & Density Focus chain K
Glycosylation Resources
GlyTouCan: G21290RB GlyCosmos: G21290RB GlyGen: G21290RB

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain O [auth A] SDF format, chain Z [auth B] SDF format, chain Y [auth B] SDF format, chain N [auth A] MOL2 format, chain M [auth A] MOL2 format, chain O [auth A] MOL2 format, chain Z [auth B] MOL2 format, chain Y [auth B] MOL2 format, chain N [auth A] mmCIF format, chain M [auth A] mmCIF format, chain O [auth A] mmCIF format, chain Z [auth B] mmCIF format, chain Y [auth B] mmCIF format, chain N [auth A]	M [auth A], N [auth A], O [auth A], Y [auth B], Z [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain Y [auth B] Focus chain Z [auth B] Interactions & Density Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain Y [auth B] Focus chain Z [auth B]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain AA [auth B] MOL2 format, chain AA [auth B] mmCIF format, chain AA [auth B]	AA [auth B]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Interactions & Density Focus chain AA [auth B]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain DA [auth B] SDF format, chain KA [auth C] SDF format, chain LA [auth C] SDF format, chain V [auth A] SDF format, chain W [auth A] SDF format, chain X [auth A] SDF format, chain U [auth A] MOL2 format, chain DA [auth B] MOL2 format, chain KA [auth C] MOL2 format, chain LA [auth C] MOL2 format, chain V [auth A] MOL2 format, chain W [auth A] MOL2 format, chain X [auth A] MOL2 format, chain U [auth A] mmCIF format, chain DA [auth B] mmCIF format, chain KA [auth C] mmCIF format, chain LA [auth C] mmCIF format, chain V [auth A] mmCIF format, chain W [auth A] mmCIF format, chain X [auth A] mmCIF format, chain U [auth A]	DA [auth B] KA [auth C] LA [auth C] U [auth A] V [auth A] DA [auth B], KA [auth C], LA [auth C], U [auth A], V [auth A], W [auth A], X [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain DA [auth B] Focus chain KA [auth C] Focus chain LA [auth C] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A] Interactions & Density Focus chain DA [auth B] Focus chain KA [auth C] Focus chain LA [auth C] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A]
GB (Subject of Investigation/LOI) Query on GB Download Ideal Coordinates CCD File SDF format, chain HA [auth C] SDF format, chain S [auth A] SDF format, chain MA [auth D] SDF format, chain BA [auth B] MOL2 format, chain HA [auth C] MOL2 format, chain S [auth A] MOL2 format, chain MA [auth D] MOL2 format, chain BA [auth B] mmCIF format, chain HA [auth C] mmCIF format, chain S [auth A] mmCIF format, chain MA [auth D] mmCIF format, chain BA [auth B]	BA [auth B], HA [auth C], MA [auth D], S [auth A]	METHYLPHOSPHONIC ACID ESTER GROUP C H₅ O₃ P YACKEPLHDIMKIO-UHFFFAOYSA-N		Interactions Focus chain BA [auth B] Focus chain HA [auth C] Focus chain MA [auth D] Focus chain S [auth A] Interactions & Density Focus chain BA [auth B] Focus chain HA [auth C] Focus chain MA [auth D] Focus chain S [auth A]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain CA [auth B] SDF format, chain JA [auth C] SDF format, chain P [auth A] SDF format, chain T [auth A] SDF format, chain R [auth A] SDF format, chain Q [auth A] SDF format, chain IA [auth C] MOL2 format, chain CA [auth B] MOL2 format, chain JA [auth C] MOL2 format, chain P [auth A] MOL2 format, chain T [auth A] MOL2 format, chain R [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain IA [auth C] mmCIF format, chain CA [auth B] mmCIF format, chain JA [auth C] mmCIF format, chain P [auth A] mmCIF format, chain T [auth A] mmCIF format, chain R [auth A] mmCIF format, chain Q [auth A] mmCIF format, chain IA [auth C]	CA [auth B] IA [auth C] JA [auth C] P [auth A] Q [auth A] CA [auth B], IA [auth C], JA [auth C], P [auth A], Q [auth A], R [auth A], T [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain CA [auth B] Focus chain IA [auth C] Focus chain JA [auth C] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain T [auth A] Interactions & Density Focus chain CA [auth B] Focus chain IA [auth C] Focus chain JA [auth C] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain T [auth A]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain EA [auth B] SDF format, chain FA [auth B] SDF format, chain GA [auth B] SDF format, chain NA [auth D] MOL2 format, chain EA [auth B] MOL2 format, chain FA [auth B] MOL2 format, chain GA [auth B] MOL2 format, chain NA [auth D] mmCIF format, chain EA [auth B] mmCIF format, chain FA [auth B] mmCIF format, chain GA [auth B] mmCIF format, chain NA [auth D]	EA [auth B], FA [auth B], GA [auth B], NA [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain EA [auth B] Focus chain FA [auth B] Focus chain GA [auth B] Focus chain NA [auth D] Interactions & Density Focus chain EA [auth B] Focus chain FA [auth B] Focus chain GA [auth B] Focus chain NA [auth D]